Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B21
         (144 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   1.8  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    24   2.4  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    23   5.5  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    23   7.3  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 110  LIRWLM*FKGYCNAMTVITSILLIQVY 30
            L RWL+ FK Y  +     ++ LI+V+
Sbjct: 2722 LTRWLISFKNYAESYAETNNLSLIKVW 2748


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 116 LLLIRWLM*FKGYCNAMTVITSILLI 39
           L+   W     GYC AM ++ + LLI
Sbjct: 292 LVAFSWKNQEVGYCQAMNIVAAALLI 317


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1272

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 91   YINHRINKSCF 123
            YINH I K CF
Sbjct: 1208 YINHDITKECF 1218


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 77  CNAMTVITSILLIQVY 30
           CN MTVI  I +I +Y
Sbjct: 808 CNEMTVIDCIRIILIY 823


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 502,790
Number of Sequences: 5004
Number of extensions: 5315
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 2,362,478
effective HSP length: 28
effective length of database: 2,222,366
effective search space used: 42224954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)