Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B21
         (144 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1052 + 8312752-8312862,8312969-8313041,8313285-8313362,831...    25   8.4  

>06_01_1052 +
           8312752-8312862,8312969-8313041,8313285-8313362,
           8313443-8313523,8313706-8313779,8313865-8313919,
           8314031-8314079,8314222-8314359,8314455-8314536,
           8315131-8315209,8315357-8315400,8315479-8315673,
           8316110-8316185,8317427-8317507,8317623-8317703,
           8318128-8318204,8318402-8318499,8318672-8318809,
           8319397-8319478,8319564-8319642,8319885-8319931,
           8320014-8320228,8320330-8320450,8320529-8320648,
           8320731-8320849,8320964-8321036,8321112-8321231,
           8321538-8321606,8321756-8321926,8322004-8322051,
           8322192-8322333,8323244-8323341,8323684-8323828,
           8323928-8324013,8324112-8324222,8324456-8324530,
           8324836-8324901,8325036-8325224,8325315-8325425,
           8326616-8326696,8327192-8327371
          Length = 1385

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 126 LKAAFVNTMVNVIQRLL*RHDCNNFYITNTS 34
           +K A   T+   +Q+L+  HDC+ FY+T  S
Sbjct: 449 VKRAAEGTLTTNMQKLV--HDCSIFYVTALS 477


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,984,553
Number of Sequences: 37544
Number of extensions: 29554
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 14,793,348
effective HSP length: 28
effective length of database: 13,742,116
effective search space used: 261100204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)