Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B21
         (144 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC146758-1|AAI46759.1| 1266|Homo sapiens TBC1 domain family, mem...    28   6.1  
BC129994-1|AAI29995.1| 1232|Homo sapiens TBC1 domain family, mem...    28   6.1  
AK127020-1|BAC86789.1| 1015|Homo sapiens protein ( Homo sapiens ...    28   6.1  
AB020689-1|BAA74905.2| 1291|Homo sapiens KIAA0882 protein protein.     28   6.1  
AB014576-1|BAA31651.1| 1262|Homo sapiens KIAA0676 protein protein.     28   6.1  
BC122564-1|AAI22565.1|  632|Homo sapiens TBC1 domain family, mem...    27   8.1  
AL591849-3|CAI40161.1| 1178|Homo sapiens novel protein protein.        27   8.1  
AL391315-4|CAI39548.1| 1178|Homo sapiens novel protein protein.        27   8.1  
AK123957-1|BAC85735.1|  632|Homo sapiens protein ( Homo sapiens ...    27   8.1  
AK091248-1|BAC03620.1|  340|Homo sapiens protein ( Homo sapiens ...    27   8.1  

>BC146758-1|AAI46759.1| 1266|Homo sapiens TBC1 domain family, member
           9 (with GRAM domain) protein.
          Length = 1266

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 83  GYCNAMTVITSILLI 39
           GYC AM ++TS+LL+
Sbjct: 598 GYCQAMNIVTSVLLL 612


>BC129994-1|AAI29995.1| 1232|Homo sapiens TBC1 domain family, member
           9B (with GRAM domain) protein.
          Length = 1232

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 83  GYCNAMTVITSILLI 39
           GYC AM ++TS+LL+
Sbjct: 591 GYCQAMNIVTSVLLL 605


>AK127020-1|BAC86789.1| 1015|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45076 fis, clone BRAWH3027574, weakly  similar
           to Homo sapiens vascular Rab-GAP/TBC-containing (VRP).
           ).
          Length = 1015

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 83  GYCNAMTVITSILLI 39
           GYC AM ++TS+LL+
Sbjct: 445 GYCQAMNIVTSVLLL 459


>AB020689-1|BAA74905.2| 1291|Homo sapiens KIAA0882 protein protein.
          Length = 1291

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 83  GYCNAMTVITSILLI 39
           GYC AM ++TS+LL+
Sbjct: 623 GYCQAMNIVTSVLLL 637


>AB014576-1|BAA31651.1| 1262|Homo sapiens KIAA0676 protein protein.
          Length = 1262

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 83  GYCNAMTVITSILLI 39
           GYC AM ++TS+LL+
Sbjct: 603 GYCQAMNIVTSVLLL 617


>BC122564-1|AAI22565.1|  632|Homo sapiens TBC1 domain family, member
           8B (with GRAM domain) protein.
          Length = 632

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 83  GYCNAMTVITSILLI 39
           GYC AM ++TS+LL+
Sbjct: 570 GYCQAMNILTSVLLL 584


>AL591849-3|CAI40161.1| 1178|Homo sapiens novel protein protein.
          Length = 1178

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 83  GYCNAMTVITSILLI 39
           GYC AM ++TS+LL+
Sbjct: 628 GYCQAMNILTSVLLL 642


>AL391315-4|CAI39548.1| 1178|Homo sapiens novel protein protein.
          Length = 1178

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 83  GYCNAMTVITSILLI 39
           GYC AM ++TS+LL+
Sbjct: 628 GYCQAMNILTSVLLL 642


>AK123957-1|BAC85735.1|  632|Homo sapiens protein ( Homo sapiens
           cDNA FLJ41963 fis, clone PUAEN2006328, moderately
           similar to Homo sapiens TBC1 domain family, member 8
           (with GRAM ).
          Length = 632

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 83  GYCNAMTVITSILLI 39
           GYC AM ++TS+LL+
Sbjct: 570 GYCQAMNILTSVLLL 584


>AK091248-1|BAC03620.1|  340|Homo sapiens protein ( Homo sapiens
           cDNA FLJ33929 fis, clone CTONG2017458, moderately
           similar to Homo sapiens mRNA for vascular
           Rab-GAP/TBC-containing ).
          Length = 340

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 83  GYCNAMTVITSILLI 39
           GYC AM ++TS+LL+
Sbjct: 64  GYCQAMNILTSVLLL 78


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,702,221
Number of Sequences: 237096
Number of extensions: 171175
Number of successful extensions: 134
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 76,859,062
effective HSP length: 28
effective length of database: 70,220,374
effective search space used: 1334187106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)