Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B21
         (144 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81542-10|CAB04419.4|  411|Caenorhabditis elegans Hypothetical p...    26   4.2  
U40799-8|AAA81487.1|  552|Caenorhabditis elegans Hypothetical pr...    25   5.5  
Z81556-2|CAB04525.2|  445|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U13876-6|AAA21175.2|  444|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>Z81542-10|CAB04419.4|  411|Caenorhabditis elegans Hypothetical
           protein F49A5.7 protein.
          Length = 411

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -2

Query: 119 QLLLIRWLM*FKGYCNAMTVITSILLIQVYQSHN 18
           Q L + WL+   G    + +IT ++L+  + +H+
Sbjct: 13  QFLRLHWLIILIGVITEIVIITGVVLLTYFTTHH 46


>U40799-8|AAA81487.1|  552|Caenorhabditis elegans Hypothetical
           protein F42C5.9 protein.
          Length = 552

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 59  LQSWRYNSL*ITLTIVLTKAAFSDDC 136
           +  WRYN+  +   IV + + F D C
Sbjct: 509 ISPWRYNAAYLGAQIVASASTFEDSC 534


>Z81556-2|CAB04525.2|  445|Caenorhabditis elegans Hypothetical
           protein F58G1.2 protein.
          Length = 445

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 102 MVNVIQRLL*RHDCNNFYITNTSVSI 25
           M +V  R    H C  F+I++T+V+I
Sbjct: 336 MAHVFSRTFQCHFCEEFFISDTAVTI 361


>U13876-6|AAA21175.2|  444|Caenorhabditis elegans Hypothetical
           protein F57B9.8 protein.
          Length = 444

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 62  QSWRYNSL*ITLTIVLTKAAFSD 130
           QSW  N   IT+T VL + AF +
Sbjct: 106 QSWELNHADITMTKVLGEGAFGE 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,794,028
Number of Sequences: 27780
Number of extensions: 30128
Number of successful extensions: 50
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 12,740,198
effective HSP length: 28
effective length of database: 11,962,358
effective search space used: 227284802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)