Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B20
         (297 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi...    28   0.26 
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   3.1  
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...    23   9.6  
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    23   9.6  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    23   9.6  

>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
           Hat1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 28.3 bits (60), Expect = 0.26
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 147 YTRIVYLGIFSVTCFALSAAGRDINSKFAQNNESQGPLRNSC 272
           Y R++ +GIFS   F  S + + INSK A+   +Q      C
Sbjct: 253 YKRLLSMGIFSEPDFHPSLSRQWINSKIAETKLTQRQFSRCC 294


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 258 MDLEIHYFEQISNLCHGQQHSM 193
           ++L IH  E   + CHGQ +++
Sbjct: 405 LELRIHLAEVFFHCCHGQSYNL 426


>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 276 RYMSSVMDLEIHYFEQISNLCHG 208
           RY+SS+MD    + +Q+    HG
Sbjct: 255 RYISSLMDQNTQFRDQMVPFLHG 277


>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 233 SKFRIYVTASSTQCKARY 180
           +K+ IY+T S+  C +RY
Sbjct: 508 AKYAIYLTLSTFVCSSRY 525


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1334

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 134  KSITLYTHSLSGNILRNVLCIEC 202
            K + + T S S + L+N LC+ C
Sbjct: 1147 KELYIPTESTSVHFLKNKLCVGC 1169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,249,456
Number of Sequences: 5004
Number of extensions: 22054
Number of successful extensions: 47
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)