Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_B20
(297 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0212 - 1605544-1605647,1605799-1605842,1606189-1606230,160... 29 0.49
11_06_0495 - 24319531-24320831,24320923-24321109,24322919-243230... 28 1.1
02_04_0292 + 21642544-21642726 27 2.0
01_06_1807 - 40021733-40021987 27 2.6
11_01_0747 + 6296323-6296505 27 3.5
10_01_0323 + 3530246-3530446,3531091-3531726,3531860-3532018,353... 27 3.5
08_01_0866 - 8449458-8449712 26 6.0
03_01_0099 + 778521-778736,779521-779775,779831-779924,780064-78... 26 6.0
01_06_1531 + 38024757-38024790,38025592-38025803,38026111-380262... 26 6.0
01_01_1105 + 8748105-8748344 26 6.0
01_01_1073 + 8456426-8456677,8457039-8457152,8457546-8457710 26 6.0
12_02_0598 - 20894072-20894398 25 8.0
11_01_0756 - 6352810-6353064 25 8.0
10_08_0201 + 15746790-15746889,15748726-15748863,15750715-157507... 25 8.0
07_02_0027 - 11963040-11963294 25 8.0
07_01_0829 - 6703293-6703547 25 8.0
07_01_0727 - 5547718-5547972 25 8.0
07_01_0726 - 5543633-5543887 25 8.0
06_03_0476 - 21228474-21228728 25 8.0
05_04_0217 - 19140070-19140306 25 8.0
02_05_1083 + 33982277-33982531 25 8.0
01_06_0143 - 26916490-26917719 25 8.0
01_01_1074 + 8460072-8460326 25 8.0
>12_01_0212 -
1605544-1605647,1605799-1605842,1606189-1606230,
1606306-1606394,1606477-1606521,1606801-1606845,
1606874-1606981,1607065-1607150,1607553-1607640,
1608185-1608385,1608790-1608865,1608951-1609000,
1609082-1609144,1609225-1609278,1609395-1609497,
1610010-1610050,1610654-1610685,1612086-1612224
Length = 469
Score = 29.5 bits (63), Expect = 0.49
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +1
Query: 40 HCC-ECPKWI*YNTLYLGNFVYWL 108
HC C W+ +NTL+ +F YW+
Sbjct: 63 HCSPSCTSWVIFNTLFGLSFTYWM 86
>11_06_0495 -
24319531-24320831,24320923-24321109,24322919-24323062,
24324467-24324469
Length = 544
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -1
Query: 294 PTHTIRRYMSSVMDLEIHYFEQISNL 217
PT T+RR M++V L +H+F+Q S +
Sbjct: 333 PTPTVRRIMTNV--LSLHFFQQASGI 356
>02_04_0292 + 21642544-21642726
Length = 60
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 294 PTHTIRRYMSSVMDLEIHYFEQ 229
P T+RRY S++ DL H FE+
Sbjct: 18 PPDTVRRYESAISDLAGHGFEE 39
>01_06_1807 - 40021733-40021987
Length = 84
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 285 TIRRYMSSVMDLEIHYFEQISNLCHGQQHSMQSTL 181
T+RRY S++ DL H FE+ L + +Q+ +
Sbjct: 45 TVRRYESAISDLAGHGFEEEGYLVINYKSDLQTVM 79
>11_01_0747 + 6296323-6296505
Length = 60
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -1
Query: 285 TIRRYMSSVMDLEIHYFEQISNLCHGQQHSMQSTL 181
TIRRY S V DL H FE+ + G + +Q+ +
Sbjct: 21 TIRRYESVVSDLAGHGFEEGAYPVVGYESDLQTAM 55
>10_01_0323 +
3530246-3530446,3531091-3531726,3531860-3532018,
3532276-3532569,3557747-3557941,3558875-3559095,
3559190-3559373,3559797-3559973,3561319-3561824,
3561880-3562060
Length = 917
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = +3
Query: 129 KLKVLLYTRIVYLGIFSVTCFALSAAGRDINSKFAQNNESQG 254
++ V + T I+YL + + + A G D+ + F+ N+++G
Sbjct: 556 RMSVFITTLIIYLCVKLMEIDSYVAYGNDVVNSFSTGNQTEG 597
>08_01_0866 - 8449458-8449712
Length = 84
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 285 TIRRYMSSVMDLEIHYFEQ 229
T+RRY S++ DL H FE+
Sbjct: 45 TVRRYESAISDLAEHGFEE 63
>03_01_0099 +
778521-778736,779521-779775,779831-779924,780064-780116,
780301-780339,781091-781159,781275-781445,781533-781598,
782533-782601,782993-783060,783308-783430,784095-784228,
784412-784506,784600-784644,784755-784814,785548-785599,
785674-785714,785857-785921,786704-786755,787021-787092
Length = 612
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -3
Query: 154 RV*SNTFSLLIN*LYKASIQNYLNIMYCIKSIWDTR 47
R+ S T L+ L +Q L I+YC + I DTR
Sbjct: 572 RMISLTDELITTKLQHVQLQEELKILYCHEEIIDTR 607
>01_06_1531 +
38024757-38024790,38025592-38025803,38026111-38026248,
38026405-38026449,38026499-38026591,38028072-38028815
Length = 421
Score = 25.8 bits (54), Expect = 6.0
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +2
Query: 188 LCIECCWP 211
LC ECCWP
Sbjct: 147 LCFECCWP 154
>01_01_1105 + 8748105-8748344
Length = 79
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 285 TIRRYMSSVMDLEIHYFEQ 229
T+RRY S++ DL H FE+
Sbjct: 40 TVRRYESAISDLAEHGFEE 58
>01_01_1073 + 8456426-8456677,8457039-8457152,8457546-8457710
Length = 176
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 285 TIRRYMSSVMDLEIHYFEQ 229
T+RRY S++ DL H FE+
Sbjct: 47 TVRRYESAISDLAGHRFEE 65
>12_02_0598 - 20894072-20894398
Length = 108
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 285 TIRRYMSSVMDLEIHYFEQ 229
T+RRY S++ DL H FE+
Sbjct: 69 TVRRYESAISDLAGHGFEE 87
>11_01_0756 - 6352810-6353064
Length = 84
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 285 TIRRYMSSVMDLEIHYFEQ 229
T+RRY S++ DL H FE+
Sbjct: 45 TVRRYESAISDLAGHGFEE 63
>10_08_0201 +
15746790-15746889,15748726-15748863,15750715-15750792,
15751251-15752632
Length = 565
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 220 IRNLLKIMNLKVHYGTHVPAY 282
+RNL+ + N+ H G HV +Y
Sbjct: 424 LRNLMLLENMNKHLGGHVTSY 444
>07_02_0027 - 11963040-11963294
Length = 84
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 285 TIRRYMSSVMDLEIHYFEQ 229
T+RRY S++ DL H FE+
Sbjct: 45 TVRRYESTISDLAGHGFEE 63
>07_01_0829 - 6703293-6703547
Length = 84
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 285 TIRRYMSSVMDLEIHYFEQ 229
T+RRY S++ DL H FE+
Sbjct: 45 TVRRYESAISDLAGHGFEE 63
>07_01_0727 - 5547718-5547972
Length = 84
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 285 TIRRYMSSVMDLEIHYFEQ 229
T+RRY S++ DL H FE+
Sbjct: 45 TVRRYESAISDLTGHGFEE 63
>07_01_0726 - 5543633-5543887
Length = 84
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 285 TIRRYMSSVMDLEIHYFEQ 229
T+RRY S++ DL H FE+
Sbjct: 45 TVRRYESAISDLAGHGFEE 63
>06_03_0476 - 21228474-21228728
Length = 84
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 285 TIRRYMSSVMDLEIHYFEQ 229
T+RRY S++ DL H FE+
Sbjct: 45 TVRRYESAISDLAGHGFEE 63
>05_04_0217 - 19140070-19140306
Length = 78
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 285 TIRRYMSSVMDLEIHYFEQ 229
T+RRY S++ DL H FE+
Sbjct: 39 TVRRYESAISDLAGHGFEE 57
>02_05_1083 + 33982277-33982531
Length = 84
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 285 TIRRYMSSVMDLEIHYFEQ 229
T+RRY S++ DL H FE+
Sbjct: 45 TVRRYESAISDLAGHGFEE 63
>01_06_0143 - 26916490-26917719
Length = 409
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 60 MDLIQYIIFR*FCILALYN*LINKLKVLLY 149
MD+IQ +IF +L ++ L NK +VL+Y
Sbjct: 197 MDIIQDLIFHRGALLQGFHVLTNKEEVLVY 226
>01_01_1074 + 8460072-8460326
Length = 84
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 285 TIRRYMSSVMDLEIHYFEQ 229
T+RRY S++ DL H FE+
Sbjct: 45 TVRRYESAISDLAGHGFEE 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,308,733
Number of Sequences: 37544
Number of extensions: 114819
Number of successful extensions: 239
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 327448548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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