Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B20
         (297 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27024| Best HMM Match : Pkinase (HMM E-Value=4.7e-25)               27   2.7  
SB_55749| Best HMM Match : SRCR (HMM E-Value=0)                        26   4.7  
SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.3  
SB_22672| Best HMM Match : Ribosomal_S8 (HMM E-Value=4.2)              25   8.3  
SB_6593| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   8.3  

>SB_27024| Best HMM Match : Pkinase (HMM E-Value=4.7e-25)
          Length = 1595

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -3

Query: 103 SIQNYLNIMYCIKSIWDTRSSVITHCNLLFGCLV 2
           +++N L     +++ WD R  V   C+L   C+V
Sbjct: 406 NVENELEKTKVVRAFWDLRQEVAVLCHLQHPCVV 439


>SB_55749| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 1224

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 239  ILSKFRIYVTASSTQCKARYGEYS 168
            ++ K   Y   SST C ARYGE S
Sbjct: 1107 VICKMMGYPGVSSTSCCARYGESS 1130


>SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1512

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 239  ILSKFRIYVTASSTQCKARYGEYSQINYACI 147
            + ++ R  VTASS+   AR+GE ++I+   I
Sbjct: 1293 LCARLRYLVTASSSGTVARHGEVARISLTTI 1323


>SB_22672| Best HMM Match : Ribosomal_S8 (HMM E-Value=4.2)
          Length = 158

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 231 QISNLCHGQQHSMQSTLRRIFP 166
           +++N+ H   HS   T+ R+FP
Sbjct: 116 RLNNMTHSVSHSFSRTILRLFP 137


>SB_6593| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 141 LLYTRIVYLGIFSVTCFALSAAGRDINSKFAQNNESQGPLRNSCTCV 281
           L Y  +VY  +FS+   +LS +   +     +  E   P+RN+ + V
Sbjct: 393 LAYQGLVYAIVFSLIALSLSLSQGGMTDNPTETAEVYNPIRNTWSFV 439


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,041,729
Number of Sequences: 59808
Number of extensions: 154036
Number of successful extensions: 278
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 339527403
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)