Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B20
         (297 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93242-1|CAI42724.1| 1630|Homo sapiens Nance-Horan syndrome (con...    28   6.2  
AY456993-1|AAS13456.1| 1473|Homo sapiens Nance-Horan syndrome pr...    28   6.2  
AY456992-1|AAS13455.1| 1474|Homo sapiens Nance-Horan syndrome pr...    28   6.2  
AY436752-1|AAR03104.1| 1630|Homo sapiens Nance-Horan syndrome pr...    28   6.2  
AL845433-1|CAI41241.1| 1630|Homo sapiens Nance-Horan syndrome (c...    28   6.2  

>Z93242-1|CAI42724.1| 1630|Homo sapiens Nance-Horan syndrome
            (congenital cataracts and dental anomalies) protein.
          Length = 1630

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -1

Query: 294  PTHTIRRYMSSVMDLEIHYFEQISNLCHGQQHSMQSTLRRIFPDKLCVYKVIL 136
            PTH     + +V++   H+   +    H +Q+++  TLR   P  L +   IL
Sbjct: 1065 PTHLDLSALHNVLNKPFHHRHPLHVFTHNKQNTVGETLRSNPPPSLAITPTIL 1117


>AY456993-1|AAS13456.1| 1473|Homo sapiens Nance-Horan syndrome protein
            isoform 2 protein.
          Length = 1473

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -1

Query: 294  PTHTIRRYMSSVMDLEIHYFEQISNLCHGQQHSMQSTLRRIFPDKLCVYKVIL 136
            PTH     + +V++   H+   +    H +Q+++  TLR   P  L +   IL
Sbjct: 908  PTHLDLSALHNVLNKPFHHRHPLHVFTHNKQNTVGETLRSNPPPSLAITPTIL 960


>AY456992-1|AAS13455.1| 1474|Homo sapiens Nance-Horan syndrome protein
            isoform 1 protein.
          Length = 1474

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -1

Query: 294  PTHTIRRYMSSVMDLEIHYFEQISNLCHGQQHSMQSTLRRIFPDKLCVYKVIL 136
            PTH     + +V++   H+   +    H +Q+++  TLR   P  L +   IL
Sbjct: 909  PTHLDLSALHNVLNKPFHHRHPLHVFTHNKQNTVGETLRSNPPPSLAITPTIL 961


>AY436752-1|AAR03104.1| 1630|Homo sapiens Nance-Horan syndrome protein
            protein.
          Length = 1630

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -1

Query: 294  PTHTIRRYMSSVMDLEIHYFEQISNLCHGQQHSMQSTLRRIFPDKLCVYKVIL 136
            PTH     + +V++   H+   +    H +Q+++  TLR   P  L +   IL
Sbjct: 1065 PTHLDLSALHNVLNKPFHHRHPLHVFTHNKQNTVGETLRSNPPPSLAITPTIL 1117


>AL845433-1|CAI41241.1| 1630|Homo sapiens Nance-Horan syndrome
            (congenital cataracts and dental anomalies) protein.
          Length = 1630

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -1

Query: 294  PTHTIRRYMSSVMDLEIHYFEQISNLCHGQQHSMQSTLRRIFPDKLCVYKVIL 136
            PTH     + +V++   H+   +    H +Q+++  TLR   P  L +   IL
Sbjct: 1065 PTHLDLSALHNVLNKPFHHRHPLHVFTHNKQNTVGETLRSNPPPSLAITPTIL 1117


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,997,901
Number of Sequences: 237096
Number of extensions: 706743
Number of successful extensions: 1030
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 76,859,062
effective HSP length: 75
effective length of database: 59,076,862
effective search space used: 1358767826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)