Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B20
         (297 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025456-1|AAB70959.3|  438|Caenorhabditis elegans Hypothetical ...    27   1.8  
AY559748-1|AAS72410.1|  671|Caenorhabditis elegans heat shock tr...    27   3.2  
AY559747-1|AAS72409.1|  671|Caenorhabditis elegans heat shock tr...    27   3.2  
AL033536-5|CAA22146.1|  671|Caenorhabditis elegans Hypothetical ...    27   3.2  
L07144-6|AAK21443.1|  834|Caenorhabditis elegans Temporarily ass...    26   5.6  
L07144-5|AAU20841.1|  837|Caenorhabditis elegans Temporarily ass...    26   5.6  
AC024755-4|AAK84603.1|  225|Caenorhabditis elegans Hypothetical ...    26   5.6  
AF016433-10|AAB65387.1|  338|Caenorhabditis elegans Seven tm rec...    25   9.7  

>AF025456-1|AAB70959.3|  438|Caenorhabditis elegans Hypothetical
           protein C46F9.4 protein.
          Length = 438

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 246 IHYFEQISNLCHGQQHSMQSTLRRIFPDKLCVYK 145
           +H F  IS L +G+++      R   P +LC++K
Sbjct: 9   VHTFNDISKLGNGKRYYSDIEKRHNIPWRLCIFK 42


>AY559748-1|AAS72410.1|  671|Caenorhabditis elegans heat shock
           transcription factor 1 protein.
          Length = 671

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 120 LINKLKVLLYTRIVYLGIFSVT-CFALSAAGRDINSKFAQNNESQGPLRNSC 272
           L++ ++  L  R+   G+  +  C A   AG   NSK A+ N  +GP ++ C
Sbjct: 269 LVSVMQPGLSKRVAKRGVLEIDFCAANGTAGP--NSKRARMNSEEGPYKDVC 318


>AY559747-1|AAS72409.1|  671|Caenorhabditis elegans heat shock
           transcription factor 1 protein.
          Length = 671

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 120 LINKLKVLLYTRIVYLGIFSVT-CFALSAAGRDINSKFAQNNESQGPLRNSC 272
           L++ ++  L  R+   G+  +  C A   AG   NSK A+ N  +GP ++ C
Sbjct: 269 LVSVMQPGLSKRVAKRGVLEIDFCAANGTAGP--NSKRARMNSEEGPYKDVC 318


>AL033536-5|CAA22146.1|  671|Caenorhabditis elegans Hypothetical
           protein Y53C10A.12 protein.
          Length = 671

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 120 LINKLKVLLYTRIVYLGIFSVT-CFALSAAGRDINSKFAQNNESQGPLRNSC 272
           L++ ++  L  R+   G+  +  C A   AG   NSK A+ N  +GP ++ C
Sbjct: 269 LVSVMQPGLSKRVAKRGVLEIDFCAANGTAGP--NSKRARMNSEEGPYKDVC 318


>L07144-6|AAK21443.1|  834|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 84, isoform a protein.
          Length = 834

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 73  CIKSIWDTRSSVITHCNLLFG 11
           CIK+++DTR      CN  FG
Sbjct: 805 CIKTMYDTRQRKCPKCNSNFG 825


>L07144-5|AAU20841.1|  837|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 84, isoform b protein.
          Length = 837

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 73  CIKSIWDTRSSVITHCNLLFG 11
           CIK+++DTR      CN  FG
Sbjct: 808 CIKTMYDTRQRKCPKCNSNFG 828


>AC024755-4|AAK84603.1|  225|Caenorhabditis elegans Hypothetical
           protein Y34B4A.9 protein.
          Length = 225

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 106 ASIQNYLNIMYCIKSIWDTRSSVITHCNL 20
           A +Q YL    C+ + W ++S V+  C L
Sbjct: 125 AGLQTYLLNEGCMSTTWRSQSDVLRQCRL 153


>AF016433-10|AAB65387.1|  338|Caenorhabditis elegans Seven tm
           receptor protein 130 protein.
          Length = 338

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 291 THTIRRYMSSVMDLEIHYFEQIS 223
           TH I RY++   + ++HYFE I+
Sbjct: 107 THFIFRYIAVCKNNKLHYFEGIN 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,753,363
Number of Sequences: 27780
Number of extensions: 117417
Number of successful extensions: 232
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 302276744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)