Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B20
         (297 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46320.3 68415.m05763 mitochondrial substrate carrier family ...    26   5.2  
At2g46320.2 68415.m05762 mitochondrial substrate carrier family ...    26   5.2  
At2g46320.1 68415.m05761 mitochondrial substrate carrier family ...    26   5.2  

>At2g46320.3 68415.m05763 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 262

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 137 SITLYTHSLSGNILRNVLCIEC 202
           S+T+Y   ++G I R++ CI C
Sbjct: 59  SLTVYVPLVAGTIARSLACISC 80


>At2g46320.2 68415.m05762 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 262

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 137 SITLYTHSLSGNILRNVLCIEC 202
           S+T+Y   ++G I R++ CI C
Sbjct: 59  SLTVYVPLVAGTIARSLACISC 80


>At2g46320.1 68415.m05761 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 361

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 137 SITLYTHSLSGNILRNVLCIEC 202
           S+T+Y   ++G I R++ CI C
Sbjct: 158 SLTVYVPLVAGTIARSLACISC 179


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,155,878
Number of Sequences: 28952
Number of extensions: 102268
Number of successful extensions: 190
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 281229760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)