Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B19
         (362 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   3.6  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    24   6.3  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    24   6.3  
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc...    24   8.3  

>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 279

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 58 ENNETQQDYNAPDLH 14
          E  E  QDYN P+LH
Sbjct: 55 ERKEDTQDYNEPELH 69


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 153 YECELRGAHVGSSPQLGPGVYSSLRHFTSAFTKIMR 46
           Y   L G     SP++     +S+ HF SA +K+++
Sbjct: 234 YTYNLLGKSTDESPKITISAGTSMSHFPSASSKLIQ 269


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 97  CILITSAFHVSFHENNET 44
           C+L    FH + HE +ET
Sbjct: 120 CVLCAPCFHATNHEGHET 137


>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 313

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 137 EVRMLVLVHSWDPVYTHHF 81
           +VR+   +  +DPVY  HF
Sbjct: 230 DVRLYTTIVRFDPVYVQHF 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,372,684
Number of Sequences: 5004
Number of extensions: 24923
Number of successful extensions: 43
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)