Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B19
         (362 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_33986| Best HMM Match : EGF_CA (HMM E-Value=3.5e-17)                29   1.5  
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                28   2.0  
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.6  
SB_40213| Best HMM Match : Pkinase_Tyr (HMM E-Value=1.1e-07)           28   2.6  
SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10)                 28   2.6  
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.4  
SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)             27   4.6  
SB_31530| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_25493| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_34756| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_58505| Best HMM Match : VWA (HMM E-Value=8.8e-22)                   26   8.0  
SB_4323| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.0  

>SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1937

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +2

Query: 35   VLLCLIIFVKADVKCRSDEYTPGPNCGLEPTC-APRSSHSYPKHTCDC 175
            V  C+I +V   V C+SD    G  C     C A  +S    + TC C
Sbjct: 1306 VCRCVIGYVGNGVDCKSDGTCEGKVCDFNGECVAKNNSDGETERTCRC 1353


>SB_33986| Best HMM Match : EGF_CA (HMM E-Value=3.5e-17)
          Length = 85

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +2

Query: 110 CGLEPTCAPRSSHSYPKHTCDCWCKPGTYRVIDTNDCVTLEHCH*PT 250
           C     C+    + Y   T  C C+PG Y + D   C  L+ C  P+
Sbjct: 5   CQFPGACSHICQNGYG--TFRCICRPGFYLLDDERTCEDLDECSLPS 49


>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 3891

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +2

Query: 179  CKPGTYRVIDTNDCVT-LEHC 238
            CKPGTY+  D   C++ LE C
Sbjct: 2966 CKPGTYQCADNRKCISVLEVC 2986


>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = +2

Query: 101  GPNCGLEPTCAPRSSHSYPKHTCDCWCKPGTYRVIDTNDCVTLEHC 238
            GP  G    C P   H Y KHTC   C  GT+  +D +D      C
Sbjct: 976  GPAKGDCLRCNP--GHVYFKHTCVTECPEGTF--VDDSDGADARRC 1017


>SB_40213| Best HMM Match : Pkinase_Tyr (HMM E-Value=1.1e-07)
          Length = 750

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +3

Query: 105 PTVD*NQHAHLVAH--IRTRSILAIAGVNQELTE*SIPMIVLH*NTAI 242
           P+VD    + +V H  I  RSIL  +GVN++  E  +  ++LH  TA+
Sbjct: 600 PSVDFWDVSKVVHHGTIDCRSILEASGVNEDSHEMRVVCMLLHRRTAL 647


>SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10)
          Length = 1514

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +2

Query: 89   EYTPGPNCGLEPTCAPRSSHSYPKHTCDCWCKPGTY 196
            E+     C     C P ++  + + + +C CKPG Y
Sbjct: 1076 EFLGTHRCKPSTQCVPVANQGFQRGSYECKCKPGYY 1111


>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3292

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = +2

Query: 62   KADVKCRSDEYTPGPNCGLEPTC-APRSSHSYP---KHTCDCWCKPGTYRVIDTNDCV 223
            + +  C+ D++    N GL   C  P  ++  P   K T +C+C P  YR    N+C+
Sbjct: 1985 RKETPCQ-DKFFSASNIGLCGPCNCPVGANFNPVCNKTTGECYCNPYHYRSPKGNECL 2041


>SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3474

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 173 CWCKPGTYRVIDTNDCVTLEHC 238
           C C PG Y +++   CV ++ C
Sbjct: 609 CTCFPGFYLMMEDQSCVDIDEC 630


>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
          Length = 3810

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 7/61 (11%)
 Frame = +2

Query: 77  CRSDEYTPGPNCGLEPTCAPRSSHSYPKHTCDCWCKPGTY-------RVIDTNDCVTLEH 235
           C S    P P  G+     P  S+   K      C PGT+        + D NDC    +
Sbjct: 474 CISGAKVPNPTDGVTGNVCPAGSYCPSKSQMHTPCPPGTFSNSTQNTALSDCNDCTEGYY 533

Query: 236 C 238
           C
Sbjct: 534 C 534


>SB_31530| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 661

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 149 SYPKHTCDCWCKPGTYR 199
           +YP+ TC+C+C P   R
Sbjct: 373 AYPRCTCECYCDPNLPR 389


>SB_25493| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 68  DVKCRSDEYTPGPNCG 115
           DVKC  +++T GPN G
Sbjct: 42  DVKCSREKFTDGPNTG 57


>SB_34756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 20  VWSVIVLLCLIIFVKADVKCRSDEYTPGPN 109
           +W V +++CL + +  DV   + + TPG N
Sbjct: 66  MWVVSIVMCLPLLIYLDVDDVTGQCTPGAN 95


>SB_58505| Best HMM Match : VWA (HMM E-Value=8.8e-22)
          Length = 410

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
 Frame = +2

Query: 77  CRSDEYTPGPNCGLEPTCAPRSS---HSYPKHTCDCWCKPG-TYRVIDTNDCVTLEHC 238
           C  D Y        E T  P++S    +   H  +C CK G T    + NDC T+ HC
Sbjct: 292 CGHDTYKSYEGFAEECTKCPKNSGHQKTGQTHISECKCKRGYTGTPENGNDC-TIRHC 348


>SB_4323| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -3

Query: 177 QQSQVCFGYECELRGAHVGSSPQLGPGVYSSLRHFTS-AFTKIMRH 43
           QQS V    +   +GAHV S P L   VY    H  + A+ +  RH
Sbjct: 18  QQSDVNANDKESKQGAHVPSKPPLKGTVYLEALHVAADAYRRSRRH 63


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,512,993
Number of Sequences: 59808
Number of extensions: 208580
Number of successful extensions: 541
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 570200590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)