Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B19
         (362 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23410.1 68416.m02951 alcohol oxidase-related similar to long...    30   0.53 
At1g18190.1 68414.m02262 expressed protein similar to golgin-84 ...    27   4.9  
At5g39300.1 68418.m04759 expansin, putative (EXP25) similar to a...    26   8.6  
At1g16680.1 68414.m01997 DNAJ heat shock N-terminal domain-conta...    26   8.6  

>At3g23410.1 68416.m02951 alcohol oxidase-related similar to long
           chain fatty alcohol oxidase from Candida cloacae
           [GI:6983581], Candida tropicalis [GI:6983594]
          Length = 746

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = -3

Query: 117 SPQLGPGVYSSLRHFTSAF---TKIMRHSKTITLQTFIVPR 4
           +PQLGPG +S L  +TS      ++ R+S+T +L T +  R
Sbjct: 548 TPQLGPGSFSVLTPWTSGLDMKKRMARYSRTASLITIVRDR 588


>At1g18190.1 68414.m02262 expressed protein similar to golgin-84
           {Homo sapiens} (GI:4191344)
          Length = 668

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 11  TMKVWSVIVLLCLIIFVKADVKCRSDEYTPG 103
           T K+W+V+ L+CL ++V   +   SD  + G
Sbjct: 619 TAKIWAVVYLVCLHLWVLYILLSHSDASSSG 649


>At5g39300.1 68418.m04759 expansin, putative (EXP25) similar to
           alpha-expansin 4 precursor GI:16923355 from [Cucumis
           sativus]; alpha-expansin gene family, PMID:11641069
          Length = 260

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 176 WCKPGTYRVIDTNDC 220
           WC PGT ++  TN C
Sbjct: 102 WCLPGTIKITATNFC 116


>At1g16680.1 68414.m01997 DNAJ heat shock N-terminal
           domain-containing protein / S-locus protein, putative
           similar to S-locus protein 5 GI:6069485 from [Brassica
           rapa]; contains Pfam profile PF00226 DnaJ domain
          Length = 496

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 8/34 (23%), Positives = 17/34 (50%)
 Frame = -2

Query: 103 TRCILITSAFHVSFHENNETQQDYNAPDLHCASC 2
           +R  ++  + H S H+N+   +   +  +HC  C
Sbjct: 305 SRTKIVCQSSHASSHQNSAAYRSEESRRIHCTKC 338


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,975,301
Number of Sequences: 28952
Number of extensions: 129236
Number of successful extensions: 325
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 467982008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)