Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B18
         (323 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    27   0.93 
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    26   1.6  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    25   2.1  
SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import com...    25   2.1  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    25   3.7  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    24   6.5  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    24   6.5  
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    24   6.5  
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    24   6.5  

>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 578

 Score = 26.6 bits (56), Expect = 0.93
 Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
 Frame = +3

Query: 48  SETWDPEAKAEYPRSN----KLVIRQALLGPDAKADELNVVQVETMSLQESVKIPVAVLK 215
           SE +   A   +P +N      +  + LL    K +  N ++       +++K  + VL+
Sbjct: 265 SEGFHHRASRYWPITNLDSFSTISEKELLNYSKKQELTNFIENSIRKKIQTIKNLIPVLQ 324

Query: 216 AGETRHARLDFEFPDA 263
             +  HAR+DF+  D+
Sbjct: 325 EMDKEHARIDFDNVDS 340


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +3

Query: 3   GIRHEELCTLSESHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKADELNVVQV 164
           G     L  L  S ++  +  +  AE     KL+  Q L+G DAK D L ++ V
Sbjct: 527 GYLTHRLSALYTSSENWVYSEQQLAEVRNMEKLLDAQ-LMGGDAKVDRLRLLMV 579


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +3

Query: 147 LNVVQVETMSLQESVKIPVA---VLKAGETRHARLDFEFPDAPVIFTLIQGSG 296
           LN +Q  T+SL+ S++I      V+      H R++  F +  +   L++G+G
Sbjct: 556 LNEIQKSTLSLK-SLQIGTILQEVMTMAREHHVRIEANFANTVLSILLVEGAG 607


>SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import
           complex anchor subunit Tim18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 186

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 260 CTCHIHSYTGFRTCSFDWSPS 322
           CT   H++ GF +C  D+ P+
Sbjct: 121 CTLITHAHLGFESCVIDYFPA 141


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -2

Query: 280 RVNMTGASGNSKSKRACLVSPAFNTAT---GIFTDSC 179
           ++N   A  NSK+K++ ++     TAT   G   DSC
Sbjct: 695 KLNKAAAVENSKAKKSVVIKKVSGTATLNLGNVKDSC 731


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 58  HVSD*CDSDRVHNSSCRIP 2
           HV D C S+  +N +CR P
Sbjct: 609 HVRDVCTSNAENNMTCRSP 627


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 262 HLSYSLLYRVQDLFI*LV 315
           HL YSL YR Q L++ L+
Sbjct: 169 HLLYSLAYRAQWLYLILI 186


>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 262 HLSYSLLYRVQDLFI*LV 315
           HL YSL YR Q L++ L+
Sbjct: 169 HLLYSLAYRAQWLYLILI 186


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 249 EFPDAPVIFTLIQGSGPVHLIGHHL 323
           EFPD P  F  ++ + P   + H L
Sbjct: 38  EFPDGPATFVRLKCTNPESKVPHFL 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,296,038
Number of Sequences: 5004
Number of extensions: 21097
Number of successful extensions: 60
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)