Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_B18
(323 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0915 + 22556522-22556536,22557719-22558177,22559796-225602... 28 1.9
07_03_0914 + 22554314-22554328,22554586-22555065 28 1.9
12_02_0061 - 13063434-13063525,13063679-13064566,13064912-130649... 26 5.9
12_01_0431 + 3396661-3397283,3399679-3399775 26 5.9
03_01_0018 - 157657-158487 26 5.9
06_01_0807 - 6069998-6071326 26 7.8
03_04_0034 + 16679624-16679940,16679980-16680199,16680319-166806... 26 7.8
03_04_0020 - 16504322-16504654,16504758-16504785,16504937-165049... 26 7.8
02_03_0267 - 17081551-17082636,17084935-17085252 26 7.8
>07_03_0915 +
22556522-22556536,22557719-22558177,22559796-22560254,
22561869-22562348
Length = 470
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 81 YPRSNKLVIRQALLGPDAKADELNVVQVETMSLQE 185
Y RSN LV+R G K E ++ VET ++ E
Sbjct: 100 YHRSNSLVLRAGRRGRAEKVGEFTMLFVETPNMSE 134
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 81 YPRSNKLVIRQALLGPDAKADELNVVQVETMSLQE 185
Y RSN LV+R G K E ++ VET ++ E
Sbjct: 253 YHRSNSLVLRAGRRGRAEKVGEFTMLFVETPNMSE 287
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 81 YPRSNKLVIRQALLGPDAKADELNVVQVETMSLQE 185
Y RSN LV+R G K E ++ VET ++ E
Sbjct: 406 YHRSNSLVLRAGRRGRAEKVGEFTMLFVETPNMSE 440
>07_03_0914 + 22554314-22554328,22554586-22555065
Length = 164
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 81 YPRSNKLVIRQALLGPDAKADELNVVQVETMSLQE 185
Y RSN LV+R G K E ++ VET ++ E
Sbjct: 100 YHRSNSLVLRAGRRGRAEKVGEFTMLFVETPNMSE 134
>12_02_0061 -
13063434-13063525,13063679-13064566,13064912-13064960,
13065059-13065330,13065422-13065797
Length = 558
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 18 ELCTLSESHQSETWDPEAKAEYPRSNKLVIRQALLGP 128
+L TL E + + KA+YP ++LVI+ L GP
Sbjct: 235 KLTTLDEYDKVICAEIPDKAKYPELHRLVIKHMLHGP 271
>12_01_0431 + 3396661-3397283,3399679-3399775
Length = 239
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +2
Query: 155 CSGGDNVITGVGKNTSRSI 211
CSGGD VI+ V K RSI
Sbjct: 200 CSGGDGVISTVEKEWRRSI 218
>03_01_0018 - 157657-158487
Length = 276
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 222 ETRHARLDFEFPDAPVIFTLIQGSGPVHL 308
+ + AR+ EFP V F + +GS PV+L
Sbjct: 161 DVQFARVPCEFPGLKVGFHVEEGSSPVYL 189
>06_01_0807 - 6069998-6071326
Length = 442
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 120 LGPDAKADELNVVQVETMSLQESVKIPVAV 209
L PDA A E NVV E Q+ ++ VA+
Sbjct: 199 LAPDAAAAEANVVSGEVDGEQQEEEVVVAI 228
>03_04_0034 +
16679624-16679940,16679980-16680199,16680319-16680624,
16680703-16681044,16681066-16681257,16681533-16681684,
16681803-16681974,16682017-16682338,16682414-16682862
Length = 823
Score = 25.8 bits (54), Expect = 7.8
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +3
Query: 126 PDAKADELNVVQVETMSLQESVKIPVAVLKAGETRHARLDFEFPDAPVIFTLIQGSGPV 302
PD+ + + V+ E++ L +S + P + AG + + E P PV G G V
Sbjct: 54 PDSSSGNTSRVRFESLDLNDSDRWPEMAMYAGMLQADDDNIEIPPPPVRVPPRVGGGGV 112
>03_04_0020 -
16504322-16504654,16504758-16504785,16504937-16504989,
16505377-16505463,16505636-16505704,16506071-16506145,
16507040-16507210,16507693-16507793,16508062-16508139,
16508492-16508648,16508737-16509006,16509369-16509485,
16510250-16510339,16510417-16510629,16510742-16510891,
16511929-16512342
Length = 801
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = -1
Query: 269 DRCIGELKVQAC--MSCLSCFQYC 204
DRC + VQ C +SCL+CF+ C
Sbjct: 771 DRC-AIVMVQLCGALSCLACFECC 793
>02_03_0267 - 17081551-17082636,17084935-17085252
Length = 467
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 1 QEFGTRNCVPCQSHISQKHGTQRLKQNIHAVI 96
+E G VPC HI + +R K+N AV+
Sbjct: 379 EEIGETGGVPCMLHIIKDDQCKRNKENAVAVL 410
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,781,632
Number of Sequences: 37544
Number of extensions: 148579
Number of successful extensions: 437
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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