Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_B18
(323 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45284| Best HMM Match : Nucleoplasmin (HMM E-Value=8.7e-10) 41 3e-04
SB_24885| Best HMM Match : HOOK (HMM E-Value=0.00023) 29 1.1
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.0
SB_48082| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.0
SB_10769| Best HMM Match : AnfG_VnfG (HMM E-Value=0.76) 27 2.6
SB_18589| Best HMM Match : Filament (HMM E-Value=0.024) 27 2.6
SB_6583| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.5
SB_49108| Best HMM Match : Bcl-2 (HMM E-Value=1.1e-28) 27 4.6
SB_48360| Best HMM Match : EGF (HMM E-Value=0.1) 27 4.6
SB_2972| Best HMM Match : PA (HMM E-Value=1.8) 27 4.6
SB_49135| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.6
SB_42339| Best HMM Match : LIM (HMM E-Value=8.9) 27 4.6
SB_18769| Best HMM Match : LIM (HMM E-Value=8.9) 27 4.6
SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56) 26 6.1
SB_21060| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.1
>SB_45284| Best HMM Match : Nucleoplasmin (HMM E-Value=8.7e-10)
Length = 282
Score = 40.7 bits (91), Expect = 3e-04
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Frame = +3
Query: 24 CTLSESHQSETWDPEAKAEYPR----SNKLVIRQALLGPDAKADELNVVQVETMSLQ-ES 188
C LS+S + TW+PE E +KLV+ QA LG +KA ++V+V +M + +
Sbjct: 12 CVLSKSEDTVTWNPEFDGEDTLLGQIEHKLVLSQACLG--SKATGKSMVEVTSMDFKGDD 69
Query: 189 VKIPVAVLKAGETRHARLDFEFPDAPVIFTLIQG 290
+ L+ G T L+ F PV F L G
Sbjct: 70 STHTIVSLREGATEMCALNLAF-SPPVTFKLASG 102
>SB_24885| Best HMM Match : HOOK (HMM E-Value=0.00023)
Length = 873
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 93 NKLVIRQALLGPDAKADELNVVQVETMSLQ 182
NKLV+ Q LLG AK + + +++ E L+
Sbjct: 304 NKLVLEQQLLGLSAKEERIEILEEENKKLK 333
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 27.9 bits (59), Expect = 2.0
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = +3
Query: 18 ELCTLSESHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKADELNVVQVETMSLQESVKI 197
EL T+ E+ + ET D +P+ +L + + L + N V E S+ S+KI
Sbjct: 614 ELETIPEASEQET-DSTQNLNFPKKAELKVDDSKLFQELFKGMFNFVGGEMASMGVSLKI 672
Query: 198 PVAVLK 215
P +K
Sbjct: 673 PKDAIK 678
>SB_48082| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 665
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 283 IRVNMTGASGNSKSKRACLVSPAFNTATGIFTDSCNDI 170
I VN AS N R C +S T++G ++CND+
Sbjct: 538 ILVNYFTASPNMTGFRLCQISVLNKTSSGQTEEACNDL 575
>SB_10769| Best HMM Match : AnfG_VnfG (HMM E-Value=0.76)
Length = 88
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +3
Query: 132 AKADELNVVQVETMSLQESVKIPVAVLKAGETRHAR 239
AK+ E NV+ + SLQ+S++ + L A + +HAR
Sbjct: 53 AKSAENNVLSEQVTSLQDSLQHRLVELSALQQQHAR 88
>SB_18589| Best HMM Match : Filament (HMM E-Value=0.024)
Length = 324
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +3
Query: 132 AKADELNVVQVETMSLQESVKIPVAVLKAGETRHAR 239
AK+ E NV+ + SLQ+S++ + L A + +HAR
Sbjct: 127 AKSAENNVLSEQVTSLQDSLQHRLVELSALQQQHAR 162
>SB_6583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 88
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 28 PCQSHISQKHGTQRLKQNIHAVISWLSVKHYLV 126
PC++ Q L Q+ H V++ L + H+LV
Sbjct: 53 PCETPKHLMEDLQSLAQDTHEVLASLKINHFLV 85
>SB_49108| Best HMM Match : Bcl-2 (HMM E-Value=1.1e-28)
Length = 252
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 19 NCVPCQSHISQKHGTQRLKQNIHAVISWLSVKHYLV 126
N C++ HG LKQ + IS +SV H L+
Sbjct: 12 NAHECETETVSTHGRVSLKQEFNYKISLISVLHSLM 47
>SB_48360| Best HMM Match : EGF (HMM E-Value=0.1)
Length = 594
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 188 GKNTSRSIESRRDKTCTLGL*VPRCTCHIHSYTG 289
GK S+ SRR TC G+ C CH+ Y G
Sbjct: 516 GKENSQFTWSRRKGTCIDGINNYTCRCHV-GYKG 548
>SB_2972| Best HMM Match : PA (HMM E-Value=1.8)
Length = 151
Score = 26.6 bits (56), Expect = 4.6
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +3
Query: 39 SHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKADELNVVQVETMSLQESVKIPVAVLKA 218
S+++E P AKA+ P A +G + K + QVE L++ V+ A+L+A
Sbjct: 91 SNEAEGKQPSAKAQVPEDKVKAPSGAQVGTEGKVQDPVTAQVE--ELKKRVEEEEALLQA 148
>SB_49135| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 824
Score = 26.6 bits (56), Expect = 4.6
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +3
Query: 144 ELNVVQVETMSLQESVKIPVAVLKAG-ETRHAR--LDFEFPDAP 266
ELN VET SLQ S++ + +L G +H L F+FP P
Sbjct: 399 ELNKTFVETRSLQTSIRDLLPLLPEGVPEKHPSWPLGFQFPFQP 442
>SB_42339| Best HMM Match : LIM (HMM E-Value=8.9)
Length = 279
Score = 26.6 bits (56), Expect = 4.6
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 49 QKHGTQRLKQNIHAVISWLSVKHYL-VRTLKQMSLMLFRWRQ 171
QKHG ++KQ I+ W+S K + + +K L LF R+
Sbjct: 30 QKHGISQIKQLINEQRIWISEKELMCLYGIKSNFLTLFALRK 71
>SB_18769| Best HMM Match : LIM (HMM E-Value=8.9)
Length = 279
Score = 26.6 bits (56), Expect = 4.6
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 49 QKHGTQRLKQNIHAVISWLSVKHYL-VRTLKQMSLMLFRWRQ 171
QKHG ++KQ I+ W+S K + + +K L LF R+
Sbjct: 30 QKHGISQIKQLINEQRIWISEKELMCLYGIKSNFLTLFALRK 71
>SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56)
Length = 1566
Score = 26.2 bits (55), Expect = 6.1
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Frame = +3
Query: 9 RHEELCTLSESHQSETWDPEAKAEYPRSNKLV--IRQALLGPDAKADEL--------NVV 158
R E+ TL E + EA E R + + +++A L + D++ N+
Sbjct: 124 RQEQAKTLEEKKRQRLRSREAAMEEKRQKERLRHVQEASLHLRSHQDDVKRLDGYINNIR 183
Query: 159 QVETMSLQESVKIPVAVLKAGETRH 233
+ +TM+LQE ++I ++K + +H
Sbjct: 184 EQQTMTLQEKIRIRQKMMKKLQDQH 208
>SB_21060| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 845
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 13 TRNCVPCQSHISQKHGTQRLKQNIHAVIS 99
T NC C I Q H +R++ + H I+
Sbjct: 739 TLNCRKCHVFICQAHEIKRVRDSYHVTIA 767
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,250,851
Number of Sequences: 59808
Number of extensions: 170118
Number of successful extensions: 447
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 438034835
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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