Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_B18
(323 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z71262-12|CAA95808.1| 545|Caenorhabditis elegans Hypothetical p... 27 3.1
U80442-5|AAB37668.2| 794|Caenorhabditis elegans Hypothetical pr... 27 3.1
AL021176-1|CAA15975.2| 317|Caenorhabditis elegans Hypothetical ... 27 4.1
AC006666-1|AAK21417.1| 339|Caenorhabditis elegans Cyclin b prot... 26 5.4
Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical p... 26 7.2
Z81479-11|CAB03937.2| 1441|Caenorhabditis elegans Hypothetical p... 26 7.2
Z73423-8|CAO82012.1| 1441|Caenorhabditis elegans Hypothetical pr... 26 7.2
U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily as... 26 7.2
AF025462-8|AAB71004.1| 121|Caenorhabditis elegans Hypothetical ... 26 7.2
U88311-1|AAB42346.1| 177|Caenorhabditis elegans Hypothetical pr... 25 9.5
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos... 25 9.5
U41266-1|AAM48565.1| 521|Caenorhabditis elegans Zinc metallopro... 25 9.5
AF016421-6|AAT92074.1| 984|Caenorhabditis elegans Hypothetical ... 25 9.5
AF016421-5|AAO12429.1| 1008|Caenorhabditis elegans Hypothetical ... 25 9.5
AF016421-4|AAC25789.1| 1067|Caenorhabditis elegans Hypothetical ... 25 9.5
AF016421-3|AAM45374.1| 1051|Caenorhabditis elegans Hypothetical ... 25 9.5
AB007817-1|BAA28353.1| 521|Caenorhabditis elegans matrix metall... 25 9.5
>Z71262-12|CAA95808.1| 545|Caenorhabditis elegans Hypothetical
protein F22D6.3a protein.
Length = 545
Score = 27.1 bits (57), Expect = 3.1
Identities = 16/67 (23%), Positives = 31/67 (46%)
Frame = +3
Query: 18 ELCTLSESHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKADELNVVQVETMSLQESVKI 197
E +S + E+W+P AKA ++ K + A E + + +L+E+ KI
Sbjct: 38 EFLMKKKSEEGESWEPAAKAAIKKAVKKYEAEVKKLEKAGCREKEAEEAQHAALEEAKKI 97
Query: 198 PVAVLKA 218
++ K+
Sbjct: 98 TFSLDKS 104
>U80442-5|AAB37668.2| 794|Caenorhabditis elegans Hypothetical
protein T20F5.6 protein.
Length = 794
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 60 DPEAKAEYPRSNKLVIRQALLGPDAKADELNVVQVETMSLQ 182
+ EA A R+ K + ALL PDA D N ++ + +Q
Sbjct: 690 EAEANANGQRAPKNIEMPALLNPDANPDAPNFKNLQPLQVQ 730
>AL021176-1|CAA15975.2| 317|Caenorhabditis elegans Hypothetical
protein Y43E12A.1 protein.
Length = 317
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/53 (22%), Positives = 29/53 (54%)
Frame = +3
Query: 9 RHEELCTLSESHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKADELNVVQVE 167
RH++LC + E +QS + + Y +++++ + +G + +A E ++E
Sbjct: 268 RHQKLCAIREKYQSSKF---GRVSYLMTDEILEKIHRMGRNVEASEAETSEME 317
>AC006666-1|AAK21417.1| 339|Caenorhabditis elegans Cyclin b protein
2.2 protein.
Length = 339
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/53 (22%), Positives = 29/53 (54%)
Frame = +3
Query: 9 RHEELCTLSESHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKADELNVVQVE 167
RH++LC + E +QS + + Y +++++ + +G + +A E ++E
Sbjct: 290 RHQKLCAIREKYQSSKF---GRVSYLMTDEILEKIHRMGRNLEASEAETSEME 339
>Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical
protein Y69H2.10b protein.
Length = 975
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = -2
Query: 253 NSKSKRACLVSPAFNTATG--IFTDSCND 173
N KRAC+ +P F G + DSC D
Sbjct: 826 NKSCKRACICAPGFVKENGKCVTLDSCPD 854
>Z81479-11|CAB03937.2| 1441|Caenorhabditis elegans Hypothetical
protein C34F6.10 protein.
Length = 1441
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -3
Query: 189 PTPVMTLSPPEQ 154
PTPVMTL PP Q
Sbjct: 331 PTPVMTLPPPPQ 342
>Z73423-8|CAO82012.1| 1441|Caenorhabditis elegans Hypothetical
protein C34F6.10 protein.
Length = 1441
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -3
Query: 189 PTPVMTLSPPEQ 154
PTPVMTL PP Q
Sbjct: 331 PTPVMTLPPPPQ 342
>U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily
assigned gene nameprotein 77 protein.
Length = 1004
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/30 (36%), Positives = 22/30 (73%)
Frame = +1
Query: 64 QRLKQNIHAVISWLSVKHYLVRTLKQMSLM 153
QRLK+ +A + +L V++ V+ LK+M+++
Sbjct: 348 QRLKKLHYAAVEFLKVQNNYVQYLKEMAVL 377
>AF025462-8|AAB71004.1| 121|Caenorhabditis elegans Hypothetical
protein K10F12.6 protein.
Length = 121
Score = 25.8 bits (54), Expect = 7.2
Identities = 8/28 (28%), Positives = 20/28 (71%)
Frame = +1
Query: 61 TQRLKQNIHAVISWLSVKHYLVRTLKQM 144
T +++++ + ++WL + Y+ R+LKQ+
Sbjct: 55 TSTMRRSLESRLAWLGRQSYVFRSLKQL 82
>U88311-1|AAB42346.1| 177|Caenorhabditis elegans Hypothetical
protein C10H11.7 protein.
Length = 177
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 192 KIPVAVLKAGETRHARLDFEFPDA 263
K V +K+GE H R+ F PDA
Sbjct: 87 KPSVGFIKSGEKVHVRVTFNSPDA 110
>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
protein 1 protein.
Length = 1963
Score = 25.4 bits (53), Expect = 9.5
Identities = 19/82 (23%), Positives = 33/82 (40%)
Frame = +3
Query: 18 ELCTLSESHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKADELNVVQVETMSLQESVKI 197
EL + SH+ + ++ +++ALL DA + EL + +SL V I
Sbjct: 1432 ELENVRASHRDSEKRQKKFESQMAEERVAVQKALLDRDAMSQELRDRETRVLSLLNEVDI 1491
Query: 198 PVAVLKAGETRHARLDFEFPDA 263
L+ + L E D+
Sbjct: 1492 MKEHLEESDRVRRSLQQELQDS 1513
>U41266-1|AAM48565.1| 521|Caenorhabditis elegans Zinc
metalloprotease protein 1 protein.
Length = 521
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/44 (25%), Positives = 19/44 (43%)
Frame = +3
Query: 177 LQESVKIPVAVLKAGETRHARLDFEFPDAPVIFTLIQGSGPVHL 308
++ SVK P+ V+ AG H F + +G +H+
Sbjct: 146 VESSVKNPMMVISAGRENHYPCTVRFDTKTLAHAFFPTNGQIHI 189
>AF016421-6|AAT92074.1| 984|Caenorhabditis elegans Hypothetical
protein F44E7.4d protein.
Length = 984
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 201 VAVLKAGETRHARLDFEFPDAPVIFTLIQGSGPVHLIGH 317
+ V+ +TR + F FPD F G HLIGH
Sbjct: 324 IDVVPIKDTRLVSISFPFPDLNGEFLSQPGHYISHLIGH 362
>AF016421-5|AAO12429.1| 1008|Caenorhabditis elegans Hypothetical
protein F44E7.4c protein.
Length = 1008
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 201 VAVLKAGETRHARLDFEFPDAPVIFTLIQGSGPVHLIGH 317
+ V+ +TR + F FPD F G HLIGH
Sbjct: 265 IDVVPIKDTRLVSISFPFPDLNGEFLSQPGHYISHLIGH 303
>AF016421-4|AAC25789.1| 1067|Caenorhabditis elegans Hypothetical
protein F44E7.4a protein.
Length = 1067
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 201 VAVLKAGETRHARLDFEFPDAPVIFTLIQGSGPVHLIGH 317
+ V+ +TR + F FPD F G HLIGH
Sbjct: 324 IDVVPIKDTRLVSISFPFPDLNGEFLSQPGHYISHLIGH 362
>AF016421-3|AAM45374.1| 1051|Caenorhabditis elegans Hypothetical
protein F44E7.4b protein.
Length = 1051
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 201 VAVLKAGETRHARLDFEFPDAPVIFTLIQGSGPVHLIGH 317
+ V+ +TR + F FPD F G HLIGH
Sbjct: 324 IDVVPIKDTRLVSISFPFPDLNGEFLSQPGHYISHLIGH 362
>AB007817-1|BAA28353.1| 521|Caenorhabditis elegans matrix
metalloproteinase protein.
Length = 521
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/44 (25%), Positives = 19/44 (43%)
Frame = +3
Query: 177 LQESVKIPVAVLKAGETRHARLDFEFPDAPVIFTLIQGSGPVHL 308
++ SVK P+ V+ AG H F + +G +H+
Sbjct: 146 VESSVKNPMMVISAGRENHYPCTVRFDTKTLAHAFFPTNGQIHI 189
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,372,513
Number of Sequences: 27780
Number of extensions: 127401
Number of successful extensions: 361
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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