Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B18
         (323 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   2.1  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   2.8  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   2.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   4.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   4.9  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    20   6.5  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    20   6.5  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    20   6.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    20   6.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   8.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   8.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   8.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   8.6  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              20   8.6  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -2

Query: 271 MTGASGNSKSKRACLVSPAFNTATG--IFTDSCNDIV 167
           +TG  GN  +    + +PA  TAT   +F+ + +D++
Sbjct: 52  VTGIFGNITTCTVIIKNPAMQTATNYYLFSLAISDLI 88


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 132 RPDQVVLDG*PAYYCVDILL*PLGPMFLTDVT 37
           RPD     G PA   VDI++  +GP+   D+T
Sbjct: 22  RPD---FGGPPATVEVDIMVRSMGPISEVDMT 50


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 282 IQGSGPVHLIG 314
           I GSG VHL+G
Sbjct: 181 IAGSGAVHLVG 191


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 158 SGGDNVITGVGKNTSRSI 211
           +G   +ITGVGK TS ++
Sbjct: 822 TGKVEMITGVGKATSPNL 839


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = -1

Query: 242 QACMSCLSCFQY 207
           Q C  C +C QY
Sbjct: 604 QCCWHCFNCTQY 615



 Score = 20.2 bits (40), Expect = 6.5
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 64  GSHVSD*CDSD 32
           G+H+ D CD+D
Sbjct: 168 GAHILDDCDND 178


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 7/27 (25%), Positives = 13/27 (48%)
 Frame = -2

Query: 253 NSKSKRACLVSPAFNTATGIFTDSCND 173
           N      CL +P  N+ + + + +C D
Sbjct: 40  NGHCSHLCLPAPRINSKSPLLSCACPD 66


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 7/27 (25%), Positives = 13/27 (48%)
 Frame = -2

Query: 253 NSKSKRACLVSPAFNTATGIFTDSCND 173
           N      CL +P  N+ + + + +C D
Sbjct: 40  NGHCSHLCLPAPRINSKSPLLSCACPD 66


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 188 GKNTSRSIESRRD 226
           GK+T+ S+E +RD
Sbjct: 130 GKSTTTSVEVKRD 142


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 4   EFGTRNCVPCQSHISQKHGT 63
           E G  +CV CQ+   Q + T
Sbjct: 188 ETGPSHCVVCQNFFYQIYAT 207


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 6/20 (30%), Positives = 8/20 (40%)
 Frame = -2

Query: 298 GPEPCIRVNMTGASGNSKSK 239
           GP PC      G +   + K
Sbjct: 431 GPNPCTHTTTNGCTAELRKK 450


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 6/20 (30%), Positives = 8/20 (40%)
 Frame = -2

Query: 298 GPEPCIRVNMTGASGNSKSK 239
           GP PC      G +   + K
Sbjct: 417 GPNPCTHTTTNGCTAELRKK 436


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 6/20 (30%), Positives = 8/20 (40%)
 Frame = -2

Query: 298 GPEPCIRVNMTGASGNSKSK 239
           GP PC      G +   + K
Sbjct: 451 GPNPCTHTTTNGCTAELRKK 470


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 6/20 (30%), Positives = 8/20 (40%)
 Frame = -2

Query: 298 GPEPCIRVNMTGASGNSKSK 239
           GP PC      G +   + K
Sbjct: 400 GPNPCTHTTTNGCTAELRKK 419


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = -1

Query: 224 LSCFQYCDW 198
           L C+ YC W
Sbjct: 69  LKCYMYCLW 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,394
Number of Sequences: 438
Number of extensions: 1740
Number of successful extensions: 15
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7093251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)