Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B18
         (323 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g75130.1 68414.m08725 cytochrome P450 family protein similar ...    31   0.18 
At4g22970.1 68417.m03315 peptidase C50 family protein contains P...    29   0.71 
At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)...    27   2.2  
At3g58050.1 68416.m06471 expressed protein                             27   2.9  
At3g08030.2 68416.m00981 expressed protein contains Pfam profile...    27   2.9  
At3g08030.1 68416.m00980 expressed protein contains Pfam profile...    27   2.9  
At2g27670.1 68415.m03353 hypothetical protein contains Pfam prof...    26   5.0  
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t...    26   5.0  
At5g47740.1 68418.m05898 expressed protein                             26   6.7  
At1g59860.1 68414.m06742 17.6 kDa class I heat shock protein (HS...    26   6.7  
At1g23740.1 68414.m02996 oxidoreductase, zinc-binding dehydrogen...    26   6.7  
At5g59590.1 68418.m07467 UDP-glucoronosyl/UDP-glucosyl transfera...    25   8.8  
At5g51760.1 68418.m06418 protein phosphatase 2C, putative / PP2C...    25   8.8  
At3g22845.1 68416.m02879 emp24/gp25L/p24 protein-related contain...    25   8.8  
At2g45640.1 68415.m05675 sin3 associated polypeptide p18 family ...    25   8.8  

>At1g75130.1 68414.m08725 cytochrome P450 family protein similar to
           Cytochrome P450 72A1 (SP:Q05047) [Catharanthus roseus]
          Length = 505

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
 Frame = +3

Query: 21  LCTLSESHQSETWDPEAKAEYPRSNKLVIRQ-ALLGPDAKADELNVVQVETMSLQESVKI 197
           L  ++  H  ETW  +A+   PR  +   +Q ALL P        V Q   +++ E+  +
Sbjct: 407 LSVVAMHHDKETWGDDAEEFNPRRFEDPKKQSALLVPFGLGPRTCVGQ--NLAVNEAKTV 464

Query: 198 PVAVLKAGETRHARLDFEFPDAPVIFTLIQGSGPVHLI 311
              +LK    R   L   +  APV+F  +Q     HL+
Sbjct: 465 LATILKYYSFR---LSPSYAHAPVLFVTLQPQNGAHLL 499


>At4g22970.1 68417.m03315 peptidase C50 family protein contains Pfam
           PF03568: Peptidase family C50
          Length = 1773

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +1

Query: 43  ISQKHGTQRLKQNI-HAVISWLSVKHYLVRTLKQMSLMLFRW 165
           I QK   ++++QNI H + +WLS +H L+R L     ++ +W
Sbjct: 534 ILQKCSRRKIRQNIVHILENWLSAEH-LIRRLPGPEAIVKQW 574


>At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)
           family protein low similarity to Swift [Xenopus laevis]
           GI:14164561; contains Pfam profiles PF00583:
           acetyltransferase, GNAT family, PF00533: BRCA1 C
           Terminus (BRCT) domain
          Length = 991

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +2

Query: 158 SGGDNVITGVGKNTSRSIESRRDKTCTLGL*VPRCTCHIHSYTGFRT 298
           S G NVI+GV K  +++         +L     R +CH H Y   +T
Sbjct: 470 SAGGNVISGVNKGKAKTFRI----ALSLAHGSVRVSCHFHHYRSLKT 512


>At3g58050.1 68416.m06471 expressed protein
          Length = 1209

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +3

Query: 3   GIRHEELCTLSESHQSETWDPEAKAEYPRSN 95
           G+      T    H  + W+P    +YPRSN
Sbjct: 826 GVGPNPSTTRDSLHSKQVWEPMEPKKYPRSN 856


>At3g08030.2 68416.m00981 expressed protein contains Pfam profile
           PF04862: Protein of unknown function, DUF642
          Length = 323

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +3

Query: 129 DAKADELNVVQVETMSLQESVKIPVAVLKAGETRHARLDFEFPDAPVIFTLIQG 290
           DAK D    + VE  + ++++K+P   +  G  + A   F+  +A    T   G
Sbjct: 244 DAKNDCHGSMMVEAFAARDTLKVPHTSVGGGHVKTASFKFKAVEARTRITFFSG 297


>At3g08030.1 68416.m00980 expressed protein contains Pfam profile
           PF04862: Protein of unknown function, DUF642
          Length = 365

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +3

Query: 129 DAKADELNVVQVETMSLQESVKIPVAVLKAGETRHARLDFEFPDAPVIFTLIQG 290
           DAK D    + VE  + ++++K+P   +  G  + A   F+  +A    T   G
Sbjct: 286 DAKNDCHGSMMVEAFAARDTLKVPHTSVGGGHVKTASFKFKAVEARTRITFFSG 339


>At2g27670.1 68415.m03353 hypothetical protein contains Pfam profile
           PF02713: Domain of unknown function DUF220
          Length = 293

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +3

Query: 60  DPEAKAEYPRSNKLVIRQALL--GPDAK 137
           DP+ KAEY +++  V RQA L  GP+ K
Sbjct: 54  DPKLKAEYKKNHSHVNRQARLWSGPNNK 81


>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
           RNA-binding protein GB:AAA86641 GI:1174153 from
           [Arabidopsis thaliana]
          Length = 314

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 45  QSETWDPEAKAEYPRSNKLVIRQALLGPDAK 137
           +S+   P++K EY +  KLV     L P+AK
Sbjct: 35  ESDDLKPKSKPEYDQMKKLVAMFKKLNPEAK 65


>At5g47740.1 68418.m05898 expressed protein 
          Length = 174

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 158 SGGDNVITGVGKNTSRSIESRRDKT 232
           +G DNV  GVGK  S+S E  + +T
Sbjct: 40  NGEDNVYVGVGKGDSKSEEQVKVET 64


>At1g59860.1 68414.m06742 17.6 kDa class I heat shock protein
           (HSP17.6A-CI) similar to 17.5 kDa class I heat shock
           protein SP:P04793 from [Glycine max]
          Length = 155

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
 Frame = +3

Query: 51  ETWDPEAKAEYPRSNKLVIRQALLGPDAKADELNVVQVETMSL-QESVKIPV---AVLKA 218
           + WDP  + ++P S+   I  A +     A E +V + +   + +E VK+ +   +VLK 
Sbjct: 25  DVWDPFKELQFPSSSSSAIANARVDWKETA-EAHVFKADLPGMKKEEVKVEIEDDSVLKI 83

Query: 219 GETRH 233
              RH
Sbjct: 84  SGERH 88


>At1g23740.1 68414.m02996 oxidoreductase, zinc-binding dehydrogenase
           family protein contains Pfam profile PF00107:
           oxidoreductase, zinc-binding dehydrogenase family
          Length = 386

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 17/67 (25%), Positives = 28/67 (41%)
 Frame = +3

Query: 69  AKAEYPRSNKLVIRQALLGPDAKADELNVVQVETMSLQESVKIPVAVLKAGETRHARLDF 248
           A A  P+  K  +     G D    E N+V  E    Q  +K+  A L   + +  +  F
Sbjct: 70  ADASIPKEMKAWVYSDYGGVDVLKLESNIVVPEIKEDQVLIKVVAAALNPVDAKRRQGKF 129

Query: 249 EFPDAPV 269
           +  D+P+
Sbjct: 130 KATDSPL 136


>At5g59590.1 68418.m07467 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 449

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 281 KSEYDRCIGELKVQACMSCLSCFQYCDWYFY 189
           ++ + +CIG+L  + C + ++C  Y D Y Y
Sbjct: 89  EASFKQCIGQLLHEQCNNDIACVVY-DEYMY 118


>At5g51760.1 68418.m06418 protein phosphatase 2C, putative / PP2C,
           putative contains PF00481: Protein phosphatase 2C
           domain; similar to protein phosphatase 2C (GI:10432446)
           [Nicotiana tabacum]
          Length = 416

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 182 GVGKNTSRSIESRRDKTCTLGL*VPRCTC 268
           GV K + + ++     TC  G  VP C C
Sbjct: 194 GVMKRSFKRMDEMATSTCVCGTSVPLCNC 222


>At3g22845.1 68416.m02879 emp24/gp25L/p24 protein-related contains
           weak similarity to transmembrane protein (GI:1212965)
           [Homo sapiens]
          Length = 214

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +3

Query: 120 LGPDAKADELNVVQVETMSLQESVKIPVAVLKAGETRH 233
           L  D   D +NV   E     ESV      LKA +TRH
Sbjct: 131 LAKDEHLDPVNVKIAELREALESVVAEQKYLKARDTRH 168


>At2g45640.1 68415.m05675 sin3 associated polypeptide p18 family
           protein similar to Sin3 associated polypeptide p18
           (2HOR0202) (Swiss-Prot:O00422) [Homo sapiens]
          Length = 152

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 114 ALLGPDAKADELNVVQVETMSLQESVKIPVAVLKAGETRHARLDFEF 254
           A+ G + K DE+ +   +  SL+E   +   V  A   R+ARL F F
Sbjct: 59  AVRGKEPK-DEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAF 104


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,947,567
Number of Sequences: 28952
Number of extensions: 116727
Number of successful extensions: 335
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 360538848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)