Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B17
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    27   1.5  
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      25   4.6  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    25   4.6  
SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr 1|||...    25   6.1  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    25   6.1  
SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1 |Schizosa...    25   6.1  
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    24   8.0  

>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 156 AGFSLLRAIPGIQISNDRQRARSLSSVPDLH 248
           AGFS    +PGI++S D        S PD H
Sbjct: 318 AGFSPSHMVPGIEVSADPVLQVRTFSYPDTH 348


>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +3

Query: 180 IPGIQISNDRQRARSLSS--VPDLHASHETIAIPPNSQSY 293
           IP + ISN     + L+   +  LH+ H    IPPN  +Y
Sbjct: 70  IPSLGISNHLSDNKCLARQVLFPLHSEHPENNIPPNDNNY 109


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -1

Query: 113 SRPRTLPLVCSACLGSHCDSVTQISNLSLEL 21
           SR    P     CL SH DSVT I  L+ +L
Sbjct: 200 SRQAETPRKFRYCLDSHADSVTCIDALTGDL 230


>SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 382 LPSASEVPGSGPASSFE-LESVSGLAAADA 296
           +P  + +PG+GP SS + +ES+ G   + A
Sbjct: 70  VPLETNLPGNGPISSLQVIESIVGAVGSIA 99


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 343 RLGQILVPHWRSVGYMLR 396
           +LGQ+LV  W+S  Y+L+
Sbjct: 317 KLGQLLVWEWQSESYVLK 334


>SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 396

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 117 MFSPEDSAPRLQCLPWLPLRLRYANIKSVTRIE 19
           ++S  D+AP      W+P   R  NI+ +  IE
Sbjct: 226 IYSDIDTAPLKHINNWIPREYRKRNIRLIVGIE 258


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 361 VPHWRSVGYMLRTPFL 408
           VP WR VG  + +PF+
Sbjct: 406 VPEWRLVGMCIASPFI 421


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,631,128
Number of Sequences: 5004
Number of extensions: 28916
Number of successful extensions: 55
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)