Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B17
         (410 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1457 - 33741048-33741146,33741647-33741760,33741938-337420...    29   1.9  
06_02_0007 - 10533689-10534565,10535054-10535946                       28   3.3  
10_08_0425 - 17806117-17806401,17806862-17806984,17807076-178072...    27   4.4  
06_03_1259 - 28800954-28802468                                         27   4.4  
09_04_0520 + 18286435-18287279,18287818-18288697                       27   7.7  
02_01_0512 - 3711475-3711600,3711903-3712019,3712099-3712176,371...    27   7.7  

>04_04_1457 - 33741048-33741146,33741647-33741760,33741938-33742052,
            33742154-33742560,33743342-33743476,33743576-33743970,
            33744225-33744916,33745014-33745097,33745195-33745286,
            33745374-33745457,33745535-33745714,33746258-33746302,
            33746399-33746692,33747199-33747585,33747713-33747899,
            33748042-33748118,33748936-33749067,33749315-33749416,
            33749744-33749827,33749902-33749992,33750105-33750178,
            33750644-33750664,33751433-33751477,33752427-33752561,
            33752693-33752752
          Length = 1376

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 382  LPSASEVPGSGPASSFELESVSGLAAADAS*LCEFGGI 269
            +PS    P SGP +S E  S SG A+  AS +    G+
Sbjct: 977  VPSMKYAPSSGPTTSNEGASTSGAASQTASGVLSGSGV 1014


>06_02_0007 - 10533689-10534565,10535054-10535946
          Length = 589

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 55  ESQWEPRQALQTRGRVLGREHFQ 123
           +S+WE  Q ++TR  +LG  HF+
Sbjct: 174 DSRWEAIQMIRTRDGILGLSHFK 196


>10_08_0425 -
           17806117-17806401,17806862-17806984,17807076-17807222,
           17807307-17807450,17808557-17808668,17808762-17808898,
           17809016-17809156,17810921-17811004,17811275-17811742,
           17811858-17811936,17812494-17812506,17813884-17814460,
           17814502-17814774,17814899-17815045,17815354-17815413,
           17816124-17816510
          Length = 1058

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -2

Query: 385 TLPSASEVPGSGPASSFELESVSGLAAA 302
           T P A+EVP + PAS  E    SG+ AA
Sbjct: 12  TNPEAAEVPSAAPASESEGPFDSGVVAA 39


>06_03_1259 - 28800954-28802468
          Length = 504

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 159 GFSLLRAIPGIQISNDRQRARSLSSVPDLHASHE 260
           G   L   P +++    Q  R ++S+PD H +H+
Sbjct: 78  GARCLATAPTVRLHKPHQAPRPVASLPDAHTTHD 111


>09_04_0520 + 18286435-18287279,18287818-18288697
          Length = 574

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 55  ESQWEPRQALQTRGRVLGREHFQ 123
           +S+WE  Q ++T+  +LG  HF+
Sbjct: 158 DSRWEAIQTVKTKDGILGLNHFR 180


>02_01_0512 -
           3711475-3711600,3711903-3712019,3712099-3712176,
           3712714-3712836,3713125-3713400
          Length = 239

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 394 AAYTLPSASEVPGSGPASSFELESVSGLAAAD 299
           +A   PS +E+PGSG   + +L    G   AD
Sbjct: 58  SAAAAPSFAEIPGSGGVKALDLREGPGEVPAD 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,322,484
Number of Sequences: 37544
Number of extensions: 219714
Number of successful extensions: 586
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)