Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B17
         (410 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)                    31   0.49 
SB_13966| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   1.2  
SB_23549| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_44069| Best HMM Match : Rad21_Rec8 (HMM E-Value=0.0016)             28   3.4  
SB_44616| Best HMM Match : rve (HMM E-Value=0.012)                     27   4.5  
SB_15696| Best HMM Match : DUF282 (HMM E-Value=2.5)                    27   6.0  
SB_11979| Best HMM Match : zf-C3HC4 (HMM E-Value=0.061)                27   7.9  

>SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)
          Length = 1244

 Score = 30.7 bits (66), Expect = 0.49
 Identities = 21/48 (43%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +1

Query: 79   ALQTRGRVLGREHFQQALVPT*----CRETLALAYCELYRVSKFQMTV 210
            A  T+G       F++ALVP      CRE L LAY  LYR    Q TV
Sbjct: 1027 AYVTQGLQAASTTFERALVPPVFDGFCREALWLAYLGLYRTHMAQHTV 1074


>SB_13966| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 24.6 bits (51), Expect(2) = 1.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 74  LGSHCDSVTQISNLSLELRITNP 6
           L S  D++T  +NLS  L IT+P
Sbjct: 124 LSSQVDNLTSYNNLSNRLTITSP 146



 Score = 23.4 bits (48), Expect(2) = 1.2
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -1

Query: 125 C*KCSRPRTLPLVCSACLGS 66
           C  CSRP  LP V   CL S
Sbjct: 74  CNLCSRPLDLPAVHFLCLHS 93


>SB_23549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 189 IQISNDRQRARSLSSVPDLHASHETIAIPPNSQS 290
           +Q S DRQ AR++ + PD H +  T+   P+ Q+
Sbjct: 23  VQTSPDRQTARTVQTSPDRHTA-RTVQTSPDRQT 55


>SB_44069| Best HMM Match : Rad21_Rec8 (HMM E-Value=0.0016)
          Length = 800

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 20/71 (28%), Positives = 30/71 (42%)
 Frame = +3

Query: 150 GNAGFSLLRAIPGIQISNDRQRARSLSSVPDLHASHETIAIPPNSQSYEXXXXXXXXXXX 329
           G +G  LLRA PG + S+  +++  L   PD+  S      P   + +E           
Sbjct: 645 GISGIELLRAQPGEEASSLFEQSSRLDVTPDVQPSGP--LSPIADEDFEPLHEIEEQATF 702

Query: 330 XXNEEAGPDPG 362
             +EE G D G
Sbjct: 703 LSDEEQGADFG 713


>SB_44616| Best HMM Match : rve (HMM E-Value=0.012)
          Length = 1189

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 148 DTTSELELVENVLARGLC-PSFAVLALAPIATPL 50
           D   E ++ +NV + G   PSF  +AL+P+ TPL
Sbjct: 504 DAIIENDIAQNVQSPGRSSPSFFPMALSPLPTPL 537


>SB_15696| Best HMM Match : DUF282 (HMM E-Value=2.5)
          Length = 128

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = -2

Query: 397 CAAYTLPSASEVPGSGPASSFELESVSG 314
           CA  T PS SEVP S  +SS  L    G
Sbjct: 49  CALATAPSVSEVPASTVSSSSPLRRSPG 76


>SB_11979| Best HMM Match : zf-C3HC4 (HMM E-Value=0.061)
          Length = 63

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 125 C*KCSRPRTLPLVCSACLGSHCD 57
           C  C  P T+PLV  +C   HC+
Sbjct: 11  CLICMEPYTVPLVSISCWHVHCE 33


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,842,615
Number of Sequences: 59808
Number of extensions: 242148
Number of successful extensions: 576
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)