Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B17
         (410 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT023885-1|ABA81819.1|  285|Drosophila melanogaster RE59544p pro...    42   3e-04
AE014298-965|AAF46210.2|  303|Drosophila melanogaster CG14435-PA...    42   3e-04
U14101-1|AAC46493.1| 1043|Drosophila melanogaster putative singl...    31   0.78 
AY600955-1|AAT12844.1| 1047|Drosophila melanogaster gag protein ...    31   0.78 
AY561850-1|AAS68533.1|  970|Drosophila melanogaster gag protein ...    31   0.78 
AY035777-1|AAK77970.1|  257|Drosophila melanogaster gag protein ...    31   0.78 
AJ566116-1|CAD92792.1|  970|Drosophila melanogaster gag protein ...    31   0.78 
X68816-2|CAA48714.1|  536|Drosophila melanogaster T-element prot...    28   4.2  
X68130-1|CAA48237.1|  943|Drosophila melanogaster protein ( D.me...    28   4.2  
U06920-1|AAC17188.3|  921|Drosophila melanogaster probable gag p...    28   4.2  
S56442-2|AAA14198.2|  536|Drosophila melanogaster Orf2 protein.        28   4.2  
AJ542581-1|CAD65868.3|  965|Drosophila melanogaster gag protein ...    28   4.2  
BT022345-1|AAY54761.1|  202|Drosophila melanogaster IP04478p pro...    27   9.7  
BT022261-1|AAY54677.1|  205|Drosophila melanogaster IP04778p pro...    27   9.7  
BT001868-1|AAN71638.1|  538|Drosophila melanogaster SD03344p pro...    27   9.7  
AE014297-4394|AAN14175.2|  198|Drosophila melanogaster CG31041-P...    27   9.7  

>BT023885-1|ABA81819.1|  285|Drosophila melanogaster RE59544p
           protein.
          Length = 285

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 22/36 (61%), Positives = 27/36 (75%), Gaps = 7/36 (19%)
 Frame = +3

Query: 159 GFSLLRAIPGIQI-------SNDRQRARSLSSVPDL 245
           GF+LLR +PG+Q+       S DRQRARSLSSVPD+
Sbjct: 63  GFNLLRTLPGLQVYHNQNSTSIDRQRARSLSSVPDI 98


>AE014298-965|AAF46210.2|  303|Drosophila melanogaster CG14435-PA
           protein.
          Length = 303

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 22/36 (61%), Positives = 27/36 (75%), Gaps = 7/36 (19%)
 Frame = +3

Query: 159 GFSLLRAIPGIQI-------SNDRQRARSLSSVPDL 245
           GF+LLR +PG+Q+       S DRQRARSLSSVPD+
Sbjct: 63  GFNLLRTLPGLQVYHNQNSTSIDRQRARSLSSVPDI 98


>U14101-1|AAC46493.1| 1043|Drosophila melanogaster putative
           single-stranded nucleicacid binding protein protein.
          Length = 1043

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 116 CSRPRTLPLVCSACLGSHCDS 54
           C++P+ LP  C+ C GSH  S
Sbjct: 826 CTKPKNLPATCANCNGSHVSS 846


>AY600955-1|AAT12844.1| 1047|Drosophila melanogaster gag protein
           protein.
          Length = 1047

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 116 CSRPRTLPLVCSACLGSHCDS 54
           C++P+ LP  C+ C GSH  S
Sbjct: 826 CTKPKNLPATCANCNGSHVSS 846


>AY561850-1|AAS68533.1|  970|Drosophila melanogaster gag protein
           protein.
          Length = 970

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 116 CSRPRTLPLVCSACLGSHCDS 54
           C++P+ LP  C+ C GSH  S
Sbjct: 749 CTKPKNLPATCANCNGSHVSS 769


>AY035777-1|AAK77970.1|  257|Drosophila melanogaster gag protein
           protein.
          Length = 257

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 116 CSRPRTLPLVCSACLGSHCDS 54
           C++P+ LP  C+ C GSH  S
Sbjct: 36  CTKPKNLPATCANCNGSHVSS 56


>AJ566116-1|CAD92792.1|  970|Drosophila melanogaster gag protein
           protein.
          Length = 970

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 116 CSRPRTLPLVCSACLGSHCDS 54
           C++P+ LP  C+ C GSH  S
Sbjct: 749 CTKPKNLPATCANCNGSHVSS 769


>X68816-2|CAA48714.1|  536|Drosophila melanogaster T-element
           protein.
          Length = 536

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 116 CSRPRTLPLVCSACLGSH 63
           C++PRT P  C  C G H
Sbjct: 272 CTKPRTTPATCVNCSGQH 289


>X68130-1|CAA48237.1|  943|Drosophila melanogaster protein (
           D.melanogaster DNA sequenceof Het-A transposable element
           9D4. ).
          Length = 943

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 116 CSRPRTLPLVCSACLGSH 63
           C++PRT P  C  C G H
Sbjct: 679 CTKPRTTPATCVNCSGQH 696


>U06920-1|AAC17188.3|  921|Drosophila melanogaster probable gag
           protein protein.
          Length = 921

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 116 CSRPRTLPLVCSACLGSH 63
           C++PRT P  C  C G H
Sbjct: 657 CTKPRTTPATCVNCSGQH 674


>S56442-2|AAA14198.2|  536|Drosophila melanogaster Orf2 protein.
          Length = 536

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 116 CSRPRTLPLVCSACLGSH 63
           C++PRT P  C  C G H
Sbjct: 272 CTKPRTTPATCVNCSGQH 289


>AJ542581-1|CAD65868.3|  965|Drosophila melanogaster gag protein
           protein.
          Length = 965

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 116 CSRPRTLPLVCSACLGSH 63
           C++PRT P  C  C G H
Sbjct: 694 CTKPRTTPATCVNCSGEH 711


>BT022345-1|AAY54761.1|  202|Drosophila melanogaster IP04478p
           protein.
          Length = 202

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 181 YRVSKFQMTVSGRDRCLQCRTC 246
           YR S+ +++VS RD CL   TC
Sbjct: 92  YRSSRDELSVSVRDTCLSLLTC 113


>BT022261-1|AAY54677.1|  205|Drosophila melanogaster IP04778p
           protein.
          Length = 205

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 181 YRVSKFQMTVSGRDRCLQCRTC 246
           YR S+ +++VS RD CL   TC
Sbjct: 95  YRSSRDELSVSVRDTCLSLLTC 116


>BT001868-1|AAN71638.1|  538|Drosophila melanogaster SD03344p
           protein.
          Length = 538

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 213 RARSLSSVPDLHASHETIAIPPNSQ 287
           +ARSL  V  LH+ H +++IP  S+
Sbjct: 409 QARSLLQVEKLHSRHSSLSIPTQSK 433


>AE014297-4394|AAN14175.2|  198|Drosophila melanogaster CG31041-PA
           protein.
          Length = 198

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 181 YRVSKFQMTVSGRDRCLQCRTC 246
           YR S+ +++VS RD CL   TC
Sbjct: 88  YRSSRDELSVSVRDTCLSLLTC 109


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,358,129
Number of Sequences: 53049
Number of extensions: 346839
Number of successful extensions: 931
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1209331668
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)