Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B17
         (410 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U72348-1|AAB17273.1|  355|Caenorhabditis elegans putative transc...    28   3.0  
U39740-5|AAA80428.2|  355|Caenorhabditis elegans Lim domain fami...    28   3.0  
AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical ...    27   5.3  
U41528-1|AAK39166.1|  155|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U61958-2|AAB03182.3| 1067|Caenorhabditis elegans Hypothetical pr...    26   9.2  

>U72348-1|AAB17273.1|  355|Caenorhabditis elegans putative
           transcription factor LIM-4 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = +1

Query: 172 CELYRVSKFQMTVSGR---DRCLQCRTC-MPLTKLLLYR 276
           C+     KF +++ GR   + CLQC TC  PL+    Y+
Sbjct: 101 CQHQIQDKFFLSIDGRNYHENCLQCSTCENPLSNKCFYK 139


>U39740-5|AAA80428.2|  355|Caenorhabditis elegans Lim domain family
           protein 4 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = +1

Query: 172 CELYRVSKFQMTVSGR---DRCLQCRTC-MPLTKLLLYR 276
           C+     KF +++ GR   + CLQC TC  PL+    Y+
Sbjct: 101 CQHQIQDKFFLSIDGRNYHENCLQCSTCENPLSNKCFYK 139


>AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical
           protein ZC123.1 protein.
          Length = 730

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -3

Query: 120 KMFSPEDSAPRLQCLPWLPLRLRYANIKSVTRIEDH 13
           + F+P+++A  + C  W+ L L     + V ++E H
Sbjct: 539 QFFAPDNAASCVPCPAWVTLALASRKKREVEKVEKH 574


>U41528-1|AAK39166.1|  155|Caenorhabditis elegans Hypothetical
           protein C15C7.4 protein.
          Length = 155

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -1

Query: 95  PLVCSACLGSHCDSVTQISNL 33
           P+    C  SHC++V+++SN+
Sbjct: 122 PVAFCCCRSSHCNAVSKVSNI 142


>U61958-2|AAB03182.3| 1067|Caenorhabditis elegans Hypothetical protein
            C25A8.4 protein.
          Length = 1067

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 172  NRLKPAFPDTTSELELVENVLARGLCPSFAVLALAP 65
            N  KP FP T   + + +NV   GL P   VL L+P
Sbjct: 933  NHTKPEFPSTEKFVNIWKNV---GLKPDKLVLELSP 965


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,153,332
Number of Sequences: 27780
Number of extensions: 169882
Number of successful extensions: 386
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)