Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B16
         (425 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p...    27   0.92 
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   2.1  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    26   2.8  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   3.7  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    25   6.5  
SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit...    25   6.5  

>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 27.5 bits (58), Expect = 0.92
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 49  KKKTKQQRKNARKRKSSIVQLQKSDTSK 132
           KKK K+++K+  K+KS  ++L  S T K
Sbjct: 146 KKKEKKEKKDKLKKKSKRLKLDDSHTQK 173


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 87   FACVFPLLFGFFFLIT 40
            FAC+FPLL+   F IT
Sbjct: 980  FACIFPLLYDLTFNIT 995


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 375 CFCILLGCFTAGMASLYFYIVLTYRVMCEHLIF 277
           CF + LG    G  + Y  +V+ Y ++  +L+F
Sbjct: 596 CFVLALGNRPHGSPNFYLSMVIMYSILMGYLLF 628


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1038

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 49   KKKTKQQRKNARKRKSSIVQLQKSDT 126
            KKK K ++ NA+   SSI + +K  T
Sbjct: 1003 KKKAKSEQSNAKSSSSSIKESKKMKT 1028


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
            Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +1

Query: 226  LVSSESVLEKREADSDVKYQVFTHHTICQNNIKIQRRHASGET-AQKNT 369
            LVS+ SVL+K+  D +V   V + +  C  N + ++R +  ++  QK T
Sbjct: 1111 LVSNISVLKKKTEDREVDINVLSEYRRC--NKEAEKRDSDYQSELQKRT 1157


>SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit
           subunit Ker1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +1

Query: 49  KKKTKQQRKNARKRKSSIVQLQKSDTSK 132
           KK+ K+++K A +R+    +  K+DT++
Sbjct: 112 KKRLKKEKKKAARREKEEARKAKADTTQ 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,385,417
Number of Sequences: 5004
Number of extensions: 24188
Number of successful extensions: 87
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)