Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B16
         (425 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0501 - 3869493-3869894                                           29   1.6  
01_02_0039 - 10490522-10490606,10490674-10490810,10491107-104912...    28   2.7  
01_06_0847 + 32411521-32411619,32411737-32411851,32412292-324123...    27   4.8  
02_02_0377 + 9554685-9554915                                           27   8.3  

>11_01_0501 - 3869493-3869894
          Length = 133

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +2

Query: 323 KYKDAMPAVKQPRRIQKQTW--PLIKQERYRNSTDI 424
           +++ A PAV +PRRIQ ++W  P +    Y N  D+
Sbjct: 87  RWRAADPAVVEPRRIQDKSWILPRLCNVGYYNDHDL 122


>01_02_0039 -
           10490522-10490606,10490674-10490810,10491107-10491248,
           10491355-10491419,10491528-10491641,10491846-10492119,
           10492215-10492327,10492405-10492499,10492602-10492662,
           10492774-10493103
          Length = 471

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +2

Query: 113 RNPIHLNNYTIVIKRNSNIINRLSITDIILYSLYTIF 223
           R P+   NYT++ KR  +++  L   D+ + + +T+F
Sbjct: 424 RGPLWYTNYTVIKKRELHVVRILG--DVFMAAYHTVF 458


>01_06_0847 +
           32411521-32411619,32411737-32411851,32412292-32412375,
           32412430-32413478,32414690-32416371,32416477-32416586,
           32417634-32418430,32418839-32418951,32419147-32419194,
           32419425-32419652,32419732-32419829,32419967-32420019
          Length = 1491

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +1

Query: 49  KKKTKQQRKNARKRKSSIVQLQK 117
           KKK+  ++KNA + K  +++LQ+
Sbjct: 173 KKKSNSEKKNAEEEKGKVLELQR 195


>02_02_0377 + 9554685-9554915
          Length = 76

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 25  DINASGY*KKKTKQQRKNARKRKSSIVQLQKSDT 126
           DINA    KKK K+++K  +K+K  + Q   ++T
Sbjct: 19  DINAK---KKKKKKKKKKKKKKKKKLQQAGNAET 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,169,077
Number of Sequences: 37544
Number of extensions: 126974
Number of successful extensions: 408
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)