Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B16
         (425 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33371| Best HMM Match : SRF-TF (HMM E-Value=2.4e-24)                29   2.1  
SB_24722| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.9  
SB_25| Best HMM Match : No HMM Matches (HMM E-Value=.)                 27   8.6  
SB_22258| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_33371| Best HMM Match : SRF-TF (HMM E-Value=2.4e-24)
          Length = 333

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 114 LKLYY*AFPFACVFPLLFGFFFLITARVYVC 22
           L+L+  A  FA V PLLF F F +    + C
Sbjct: 217 LRLHLCALAFALVCPLLFTFMFALCVYAHAC 247


>SB_24722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 458

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = -2

Query: 343 WHGVFVFLYCSDISCDV*TLDILHQSQPLAFLKHF 239
           W  VFV    S I+  + TL   H  Q LAF KHF
Sbjct: 377 WIAVFVLPINSSINPLLYTLSNPHARQTLAFWKHF 411


>SB_25| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 627

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/58 (20%), Positives = 27/58 (46%)
 Frame = +1

Query: 211 VYNFFLVSSESVLEKREADSDVKYQVFTHHTICQNNIKIQRRHASGETAQKNTKTNMA 384
           ++N F+   ++ L    +  ++ Y++   H I  N   +  RH++     K+  T +A
Sbjct: 337 IFNLFITYGDTFLPCPTSYDELYYEIIRVHQIFDNLYSMALRHSTNGGEFKDAATRLA 394


>SB_22258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 549

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 278 NIKCSHITRYVRTI*KYKDAMPAVKQPRRIQKQTWPLIKQERYRNST 418
           +IKCS   + V     Y++A    ++PR I++Q    ++  R R  T
Sbjct: 228 DIKCSECKKLVAVANCYREADSTTREPRNIKEQYPVRLELRRKRMPT 274


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,282,879
Number of Sequences: 59808
Number of extensions: 179848
Number of successful extensions: 758
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)