Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B16
         (425 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11490.1 68418.m01341 adaptin family protein similar to SP|Q9...    30   0.57 
At3g56920.1 68416.m06331 zinc finger (DHHC type) family protein ...    27   5.3  

>At5g11490.1 68418.m01341 adaptin family protein similar to
           SP|Q9WV76 Adapter-related protein complex 4 beta 1
           subunit (Beta subunit of AP- 4) {Mus musculus},
           beta-adaptin Drosophila 1 {Drosophila melanogaster}
           GI:434902; contains Pfam profile: PF01602 Adaptin N
           terminal region
          Length = 841

 Score = 30.3 bits (65), Expect = 0.57
 Identities = 17/51 (33%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
 Frame = -3

Query: 333 SLYFYIVLTYRV-MCEHLIFYIRVSLSLF*NTFTRH*KKIVYNEYNIMSVI 184
           +L++Y VL Y V + E ++   + ++S+F +T +   K  V++E+N +SVI
Sbjct: 543 ALFYYRVLQYDVHVAERVVSPPKQAVSVFADTQSSEIKDRVFDEFNSLSVI 593


>At3g56920.1 68416.m06331 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 338

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 8/33 (24%), Positives = 18/33 (54%)
 Frame = -3

Query: 372 FCILLGCFTAGMASLYFYIVLTYRVMCEHLIFY 274
           +C +   F  G+   +FY++ T +  CE+  ++
Sbjct: 232 YCFVSVWFVGGLTVFHFYLICTNQTTCENFRYH 264


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,961,211
Number of Sequences: 28952
Number of extensions: 115684
Number of successful extensions: 329
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)