Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B15
         (351 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    30   0.12 
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    27   0.64 
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    27   0.64 
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    27   1.1  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   1.5  
SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos...    26   1.5  
SPAC11D3.02c |||ELLA family acetyltransferase |Schizosaccharomyc...    26   2.0  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    25   2.6  
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    25   3.4  
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    25   4.5  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    25   4.5  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    24   6.0  
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    24   7.9  

>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 29.9 bits (64), Expect = 0.12
 Identities = 18/63 (28%), Positives = 33/63 (52%)
 Frame = +1

Query: 61  ATGLVGMVQPRNSSASVDSCTMRMPTPAIGPRTSTVARNTLSATKTPTATFL*VNPATDT 240
           ++ +   V P +SSA VDS T    + ++ P +S+V  ++     + T++      AT T
Sbjct: 98  SSSVAASVTPVSSSAVVDSATSAAASSSVIPTSSSVVASSSEVASSTTSSA--AASATST 155

Query: 241 GSA 249
           GS+
Sbjct: 156 GSS 158


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 27.5 bits (58), Expect = 0.64
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +3

Query: 60  RYWTCWNGTATEQLCIGGLLYNENAHSCDWPENVDGCQKHPL 185
           +YW  +   A    C+G L  +++   CDW  +++G    P+
Sbjct: 469 KYWPDFC-KAAGVFCMGDLKSSDSLKVCDWQNDLEGLSNFPV 509


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 27.5 bits (58), Expect = 0.64
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 237 ICCRIYLEERCRWGLRCR 184
           + C+ +L+ RCR+G  C+
Sbjct: 2   VVCKYFLQNRCRYGTNCK 19


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1016

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 142  AIGPRTSTVARNTLSATKTPTATFL*VNPATDTGSAKAVTLVCSAA 279
            ++ P T T  + T + T TPT T     P T + ++  V   C +A
Sbjct: 926  SLSPNTVTTTKATTTFTPTPTTTTT-PTPTTTSATSTNVIAQCGSA 970


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +3

Query: 153 ENVDGCQKHPLCNEDPNGNVPLGKSCNRYWQCQGG-YPRLQRCPAMLV--FDRRSLR 314
           E + G  K  LC++ P GN+P G+        +GG    L+  PA L+  +  RSL+
Sbjct: 634 ETIWGLIKDVLCDDSPEGNLPDGEG-------EGGIVSNLEDTPAQLILSYSWRSLK 683


>SPCC645.11c |mug117||meiotically upregulated gene
           Mug117|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 186

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 225 SCNRYWQCQGGYPRLQRCPAMLVFDRRSLRC 317
           SC   ++C+G YP       +  FD+ +L+C
Sbjct: 109 SCTAIYECEGDYPARTGNEIIDEFDQLNLQC 139


>SPAC11D3.02c |||ELLA family acetyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 150

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -3

Query: 175 FWQPSTFSGQSQEWAFSLYRSPPMQSCSVA 86
           F    TF   SQE+A  LYRS   + CS A
Sbjct: 106 FSSSKTFVLSSQEYAQPLYRSVGFKKCSDA 135


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +1

Query: 118 CTMRMPTPAIGPRTSTVARNTLSATKTPTAT 210
           CT        G  TST    T SAT TPTA+
Sbjct: 165 CTFSPIMIGKGNFTSTTVTTTTSATATPTAS 195


>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 24  LYGIFGHETSCTRYWTCWNGTATEQLCIGGLLYNENA 134
           L  + GHE++      C +   TE++ +  L+YNE A
Sbjct: 360 LISLLGHESNVPVIACCESYKFTERIQLDSLVYNELA 396


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +1

Query: 157 TSTVARNTLSATKTPTATFL*VNPATDTGSAKAVTLVC 270
           TST  +NT + TKT T     V P+    S  A T  C
Sbjct: 252 TSTQRKNTATTTKTTTY----VGPSPSASSVVAYTTKC 285


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +1

Query: 19  IGSTESSDMKRLALATGLVGMVQPRNSSASVDSCTMRMPT-PAIGPRTSTVARNTLSATK 195
           +GS++S+  + + +   L G     NSS    + T ++P   ++ P  S   + + ++  
Sbjct: 135 LGSSQSAKAELIMVPPNLAGKPLSANSSFGSSAKTFQLPEFDSVTPSASLYKQPSFNSNP 194

Query: 196 TPTAT 210
            P  T
Sbjct: 195 APITT 199


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 27  YGIFGHETSCTRYWTCWNGTATEQLC 104
           +G F  E  C R    WN   +E+LC
Sbjct: 736 FGCFAKEMVCLRDVNDWNIKLSEKLC 761


>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 457

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 56  HSLLDLLEWYSHGTALHRWT 115
           H L +LL    H T  HRWT
Sbjct: 276 HRLDELLNKLKHLTLTHRWT 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,479,807
Number of Sequences: 5004
Number of extensions: 28295
Number of successful extensions: 88
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)