Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B15
         (351 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    29   0.012
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    21   4.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   5.6  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   5.6  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    20   7.4  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    20   9.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 29.5 bits (63), Expect = 0.012
 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -3

Query: 199  GSSLQRGCFWQPSTFSGQSQEWAFSLYRSPPMQSC-SVAVPFQQ 71
            G S  RG   Q S F   S   A  L  +PP  SC +V+VP QQ
Sbjct: 1240 GVSTLRGQERQRSLFKDSSPATALMLQHAPPAYSCGTVSVPQQQ 1283


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 118 CTMRMPTPAIGPRTSTVARNTLSATK 195
           CT+R   P   PRT    +  LS  K
Sbjct: 1   CTLRKHKPNRKPRTPFTTQQLLSLEK 26


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 151 PRTSTVARNTLSATKTPTATFL*VNPATD 237
           PR       T+  T   +ATF  + P+TD
Sbjct: 462 PRYDDATNATVIQTSELSATFKGLKPSTD 490


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +3

Query: 300 RRSLRCVVPPTEECDV 347
           +++L+  +PP + CDV
Sbjct: 433 KKNLKVCLPPGQYCDV 448


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like
          GPCR protein.
          Length = 381

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 30 GIFGHETSCT 59
          GIFG+ T+CT
Sbjct: 54 GIFGNITTCT 63


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 7/15 (46%), Positives = 7/15 (46%)
 Frame = +3

Query: 42  HETSCTRYWTCWNGT 86
           H  SC R W    GT
Sbjct: 134 HADSCDRLWVLDTGT 148


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,709
Number of Sequences: 438
Number of extensions: 2538
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)