Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B15
         (351 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s...    27   2.7  
At2g24830.1 68415.m02970 zinc finger (CCCH-type) family protein ...    27   3.5  
At3g47000.1 68416.m05104 glycosyl hydrolase family 3 protein bet...    27   4.6  
At3g11890.2 68416.m01458 expressed protein                             26   6.1  
At3g11890.1 68416.m01457 expressed protein                             26   6.1  
At2g23530.1 68415.m02808 expressed protein ; expression supporte...    26   6.1  
At1g26540.1 68414.m03234 agenet domain-containing protein contai...    26   6.1  
At5g39890.1 68418.m04838 expressed protein                             26   8.1  
At1g15740.1 68414.m01888 leucine-rich repeat family protein            26   8.1  

>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
           subunit, chloroplast / 60 kDa chaperonin alpha subunit /
           CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
           subunit binding-protein alpha subunit, chloroplast
           precursor (60 kDa chaperonin alpha subunit, CPN-60
           alpha) [Arabidopsis thaliana]
          Length = 586

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 293 DQHSRAALQTRVTALALPVSVA-GFT*RNVAVGVFVAERV 177
           DQHSRAALQ  +  LA  V +  G   RNV +  F + +V
Sbjct: 54  DQHSRAALQAGIDKLADCVGLTLGPRGRNVVLDEFGSPKV 93


>At2g24830.1 68415.m02970 zinc finger (CCCH-type) family protein /
           D111/G-patch domain-containing protein contains Pfam
           profiles PF01585: G-patch domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 497

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -1

Query: 231 CRIYLEERCRWGLRCR 184
           C+ ++++RCR+G  CR
Sbjct: 142 CKFFMQQRCRFGSSCR 157


>At3g47000.1 68416.m05104 glycosyl hydrolase family 3 protein
           beta-D-glucan exohydrolase, Nicotiana tabacum,
           TREMBL:AB017502_1
          Length = 608

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 108 GGLLYNENAHSCDWPENVDGCQKHPLCN 191
           GG +  E+A S DW + +DG Q+  L +
Sbjct: 62  GGSVPFEDAKSSDWADMIDGFQRSALAS 89


>At3g11890.2 68416.m01458 expressed protein
          Length = 527

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 308 RASIEDQHSRAALQTRVTALALP 240
           R SI D H    LQT +++L LP
Sbjct: 180 RESIADTHGTTPLQTEISSLPLP 202


>At3g11890.1 68416.m01457 expressed protein
          Length = 500

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 308 RASIEDQHSRAALQTRVTALALP 240
           R SI D H    LQT +++L LP
Sbjct: 180 RESIADTHGTTPLQTEISSLPLP 202


>At2g23530.1 68415.m02808 expressed protein ; expression supported
           by MPSS
          Length = 555

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = +3

Query: 153 ENVDGCQKHP--LCNEDPNGNVPLGKSCNRYWQCQGGYPRLQRCPAMLVFDRRSLRCVVP 326
           EN D  QK      NED NG++P      +  +CQ G    +         RRSL  ++P
Sbjct: 294 ENDDSLQKEEGENTNEDQNGDLPEEVQKVQNMECQSGGSLKKEEDETPNSARRSLSFLLP 353

Query: 327 PTEE 338
             E+
Sbjct: 354 SVED 357


>At1g26540.1 68414.m03234 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 695

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 222 KSCNRYWQCQGGYPRLQRCPAMLVFDRRSLRCVVPPT 332
           K CNRY  C G   R    P  +V  RR +R + PP+
Sbjct: 190 KDCNRYLSCNGDEAR----PTNIVNSRR-VRPIPPPS 221


>At5g39890.1 68418.m04838 expressed protein
          Length = 276

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 159 VDGCQKHPLCNEDPNGNVPLGKSCNRYWQCQGGYPRLQRCPAMLVFD 299
           + G  +  L   +PNGN+P  +S +R  + Q    +   CP   +FD
Sbjct: 7   MSGRVRKDLSKTNPNGNIPENRSNSRK-KIQRRSKKTLICPVQKLFD 52


>At1g15740.1 68414.m01888 leucine-rich repeat family protein
          Length = 585

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +1

Query: 46  KRLALATGLVGMVQPRNSSASVDSCTMRMPTPAIGPRTSTVARNTLSA 189
           K L L +GL G+V    S++ V S  +R   P    R+ T+    LSA
Sbjct: 518 KTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNLRSLTLESCKLSA 565


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,117,447
Number of Sequences: 28952
Number of extensions: 163498
Number of successful extensions: 591
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 439384704
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)