Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_B14
(418 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42835-2|AAA83586.1| 617|Caenorhabditis elegans Chitinase prote... 43 1e-04
Z70035-12|CAB76726.1| 150|Caenorhabditis elegans Hypothetical p... 32 0.19
Z70035-8|CAA93868.2| 446|Caenorhabditis elegans Hypothetical pr... 31 0.34
U61958-2|AAB03182.3| 1067|Caenorhabditis elegans Hypothetical pr... 31 0.44
U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog (... 30 0.78
U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog (... 30 0.78
AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical ... 29 1.4
AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical ... 29 1.4
Z70035-6|CAA93866.1| 444|Caenorhabditis elegans Hypothetical pr... 27 5.5
AL110490-9|CAB54453.2| 607|Caenorhabditis elegans Hypothetical ... 27 5.5
AF039650-1|AAC14022.3| 607|Caenorhabditis elegans acetylcholine... 27 5.5
AC006696-8|AAF39989.1| 120|Caenorhabditis elegans Hypothetical ... 27 5.5
AL110490-8|CAB54444.2| 602|Caenorhabditis elegans Hypothetical ... 26 9.5
AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exteri... 26 9.5
AF025379-1|AAC14017.1| 602|Caenorhabditis elegans acetylcholine... 26 9.5
AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector ... 26 9.5
>U42835-2|AAA83586.1| 617|Caenorhabditis elegans Chitinase protein
1 protein.
Length = 617
Score = 42.7 bits (96), Expect = 1e-04
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +2
Query: 158 CYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRA-HA 334
CY+ + + R+ +A+ +P D P L CTH+L+ + AD +L D A
Sbjct: 57 CYFTNWAQYRQGRAKFVPEDYTPGL--CTHILFAFGWMNADYTVRAYDPADLPNDWAGEG 114
Query: 335 NYRAITNLKRQFPQLRVFLTVGG 403
YR + LK QL+ L+ GG
Sbjct: 115 MYRRVNKLKVTDTQLKTLLSFGG 137
>Z70035-12|CAB76726.1| 150|Caenorhabditis elegans Hypothetical
protein R09D1.14 protein.
Length = 150
Score = 31.9 bits (69), Expect = 0.19
Identities = 23/101 (22%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Frame = +2
Query: 116 TNHPASPSSQSKVLCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMV 295
+ +PA+P +++ YY + +Q ++ +D +S TH ++ I +D +
Sbjct: 33 STYPATPGCNKRIIGYYFA------TQTSVITSD---QVSNLTHAVFAFVNITSDGQLQI 83
Query: 296 SLNENLDIDRAHANYRAITNL-KRQFPQLRVFLTVGGDDDT 415
D D A + + + K+Q PQ++V +++GG+D++
Sbjct: 84 ------DGDLAKNRFTNLIEIAKQQTPQVKVMISIGGNDNS 118
>Z70035-8|CAA93868.2| 446|Caenorhabditis elegans Hypothetical
protein R09D1.8 protein.
Length = 446
Score = 31.1 bits (67), Expect = 0.34
Identities = 22/101 (21%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Frame = +2
Query: 116 TNHPASPSSQSKVLCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMV 295
+ +PA+P +++ YY + +Q ++ D +S TH ++ + +D + +
Sbjct: 75 STYPATPGCNKRIIGYYFA------TQTSVITRD---QVSKLTHAVFAFVNMTSDGHLQI 125
Query: 296 SLNENLDIDRAHANYRAITNL-KRQFPQLRVFLTVGGDDDT 415
D D A + + + K+Q PQ++V +++GG+D++
Sbjct: 126 ------DGDLAKNRFTNLIEIAKQQTPQVKVMISIGGNDNS 160
>U61958-2|AAB03182.3| 1067|Caenorhabditis elegans Hypothetical
protein C25A8.4 protein.
Length = 1067
Score = 30.7 bits (66), Expect = 0.44
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +2
Query: 194 QARMLPTDLEPALSFCTHLLYKSAGIQADT----YKMVSLNENLDIDRAHANYRAITNLK 361
+ R+ P L+ ++ CTHL+Y S I DT Y + + DID N R L+
Sbjct: 37 KTRLSPNLLQN-ITTCTHLVYGSIPIDRDTGYPQYSVSDVESGYDID----NIRTFMRLR 91
Query: 362 RQFPQLRVFLTV 397
+ P ++ + V
Sbjct: 92 KYHPNAKLLMGV 103
>U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog
(drosophila nompa:no mechanoreceptor potential a)
protein 1, isoform b protein.
Length = 1069
Score = 29.9 bits (64), Expect = 0.78
Identities = 21/61 (34%), Positives = 29/61 (47%)
Frame = +2
Query: 236 FCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGDDDT 415
F +L K GI A YK+VSLN L++ + A N R+ +F + DDD
Sbjct: 511 FSRYLHTKQRGIPAKVYKVVSLNSCLEVCAGNPTC-AGANYNRRLGDCTLFDAI--DDDA 567
Query: 416 E 418
E
Sbjct: 568 E 568
>U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog
(drosophila nompa:no mechanoreceptor potential a)
protein 1, isoform a protein.
Length = 1065
Score = 29.9 bits (64), Expect = 0.78
Identities = 21/61 (34%), Positives = 29/61 (47%)
Frame = +2
Query: 236 FCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGDDDT 415
F +L K GI A YK+VSLN L++ + A N R+ +F + DDD
Sbjct: 507 FSRYLHTKQRGIPAKVYKVVSLNSCLEVCAGNPTC-AGANYNRRLGDCTLFDAI--DDDA 563
Query: 416 E 418
E
Sbjct: 564 E 564
>AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical
protein Y73F8A.9 protein.
Length = 419
Score = 29.1 bits (62), Expect = 1.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 281 CQLGCRQICTADGCRTKEQAPSP 213
CQ C+Q C C T+ AP+P
Sbjct: 103 CQSSCQQTCQTSSCYTQIAAPAP 125
>AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical
protein Y73F8A.8 protein.
Length = 420
Score = 29.1 bits (62), Expect = 1.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 281 CQLGCRQICTADGCRTKEQAPSP 213
CQ C+Q C C T+ AP+P
Sbjct: 104 CQSSCQQTCQTSSCYTQIAAPAP 126
>Z70035-6|CAA93866.1| 444|Caenorhabditis elegans Hypothetical
protein R09D1.6 protein.
Length = 444
Score = 27.1 bits (57), Expect = 5.5
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
Frame = +2
Query: 308 NLDIDRAHANYRAITNL----KRQFPQLRVFLTVGGDDDT 415
+L ID A R TNL K+Q PQ++V +++GG+D++
Sbjct: 120 HLQIDGDLAKNR-FTNLIEIAKQQTPQVKVMISIGGNDNS 158
>AL110490-9|CAB54453.2| 607|Caenorhabditis elegans Hypothetical
protein Y48B6A.8 protein.
Length = 607
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 303 LSETILYVSAWMPADLYS 250
+SE LYV+ W PAD Y+
Sbjct: 116 VSEDCLYVNIWAPADAYN 133
>AF039650-1|AAC14022.3| 607|Caenorhabditis elegans
acetylcholinesterase protein.
Length = 607
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 303 LSETILYVSAWMPADLYS 250
+SE LYV+ W PAD Y+
Sbjct: 116 VSEDCLYVNIWAPADAYN 133
>AC006696-8|AAF39989.1| 120|Caenorhabditis elegans Hypothetical
protein W08E12.2 protein.
Length = 120
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -3
Query: 257 CTADGCRTKEQAPSP*AAYVLEIL*YSSCCHSSRGLCFGY 138
C+ + C AP +Y YSSCC+S+ C GY
Sbjct: 65 CSCNPCNGGGCAPR--CSYCPNNFGYSSCCNSNNFSCCGY 102
>AL110490-8|CAB54444.2| 602|Caenorhabditis elegans Hypothetical
protein Y48B6A.7 protein.
Length = 602
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 303 LSETILYVSAWMPADLYS 250
+SE LY++ W PAD Y+
Sbjct: 111 ISEDCLYLNIWAPADAYN 128
>AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exterior
protein 2 protein.
Length = 1262
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +3
Query: 138 VAKAKSSATMTAR---AISENLKHVCCLRTWSLLFRSAPICCTN 260
+AK AT A+ +SE L+H + TW R+ P+ +N
Sbjct: 56 IAKYSEEATRHAQFNDMLSEGLQHAANMYTWRCCSRAVPMAKSN 99
>AF025379-1|AAC14017.1| 602|Caenorhabditis elegans
acetylcholinesterase protein.
Length = 602
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 303 LSETILYVSAWMPADLYS 250
+SE LY++ W PAD Y+
Sbjct: 111 ISEDCLYLNIWAPADAYN 128
>AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector
protein.
Length = 1262
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +3
Query: 138 VAKAKSSATMTAR---AISENLKHVCCLRTWSLLFRSAPICCTN 260
+AK AT A+ +SE L+H + TW R+ P+ +N
Sbjct: 56 IAKYSEEATRHAQFNDMLSEGLQHAANMYTWRCCSRAVPMAKSN 99
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,185,144
Number of Sequences: 27780
Number of extensions: 165819
Number of successful extensions: 418
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -