Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B13
         (372 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8F7K9 Cluster: Putative uncharacterized protein; n=2; ...    36   0.23 
UniRef50_P33151 Cluster: Cadherin-5 precursor; n=34; Tetrapoda|R...    32   2.9  
UniRef50_Q5ZV27 Cluster: Multidrug resistance ABC transporter AT...    31   5.0  
UniRef50_A4B329 Cluster: Putative uncharacterized protein; n=1; ...    31   6.7  
UniRef50_A2EY94 Cluster: Glycosyl transferase family 8 protein; ...    31   6.7  

>UniRef50_Q8F7K9 Cluster: Putative uncharacterized protein; n=2;
           Leptospira interrogans|Rep: Putative uncharacterized
           protein - Leptospira interrogans
          Length = 355

 Score = 35.9 bits (79), Expect = 0.23
 Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
 Frame = +2

Query: 17  LSDLLSNESTLLTVEKLSTQLHLNRLL*METKLSDLVFRR-YEVVTKTVFINL 172
           L D+  NE  +L+  +++++LH  RLL +++K  DLVF   Y   T +VFI+L
Sbjct: 253 LQDIFKNE--ILSSREVTSRLHSRRLLVIKSKTKDLVFETFYSSHTGSVFIDL 303


>UniRef50_P33151 Cluster: Cadherin-5 precursor; n=34; Tetrapoda|Rep:
           Cadherin-5 precursor - Homo sapiens (Human)
          Length = 784

 Score = 32.3 bits (70), Expect = 2.9
 Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +2

Query: 149 TKTVFINLF*KRDNYLFFTQTK-SFIL*LAKRVLTSLNELFYD 274
           T TV + L    DN+ FFTQTK +F++    RV TS+  LF +
Sbjct: 241 TATVLVTLQDINDNFPFFTQTKYTFVVPEDTRVGTSVGSLFVE 283


>UniRef50_Q5ZV27 Cluster: Multidrug resistance ABC transporter ATP
           binding protein; n=10; Proteobacteria|Rep: Multidrug
           resistance ABC transporter ATP binding protein -
           Legionella pneumophila subsp. pneumophila (strain
           Philadelphia 1 /ATCC 33152 / DSM 7513)
          Length = 593

 Score = 31.5 bits (68), Expect = 5.0
 Identities = 13/28 (46%), Positives = 21/28 (75%)
 Frame = +2

Query: 14  SLSDLLSNESTLLTVEKLSTQLHLNRLL 97
           SL DL+  ++TL+   +LST LH++R+L
Sbjct: 522 SLWDLMQGKTTLVVAHRLSTLLHMDRIL 549


>UniRef50_A4B329 Cluster: Putative uncharacterized protein; n=1;
           Alteromonas macleodii 'Deep ecotype'|Rep: Putative
           uncharacterized protein - Alteromonas macleodii 'Deep
           ecotype'
          Length = 295

 Score = 31.1 bits (67), Expect = 6.7
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +2

Query: 35  NESTLLTVEKLSTQLH--LNRLL*METKLSDLVFRRYEVV 148
           N + L T+ KL TQL   L + L +E  +SD  F RYE+V
Sbjct: 5   NGAVLSTLNKLPTQLSKVLPKRLSLEQSISDFFFSRYELV 44


>UniRef50_A2EY94 Cluster: Glycosyl transferase family 8 protein; n=1;
            Trichomonas vaginalis G3|Rep: Glycosyl transferase family
            8 protein - Trichomonas vaginalis G3
          Length = 1241

 Score = 31.1 bits (67), Expect = 6.7
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 113  LSDLVFRRYEVVTKTVFINLF*KRDNYLFFTQTKSF 220
            LS      Y+    TVF+N F ++DN++ F+Q  SF
Sbjct: 914  LSKEYISSYKTEKSTVFVNSFAQKDNFVTFSQFSSF 949


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 282,591,667
Number of Sequences: 1657284
Number of extensions: 3977868
Number of successful extensions: 7490
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7490
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 13594373344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)