Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B13
         (372 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0214 + 27595125-27595200,27595298-27595494,27596077-275960...    29   1.2  
07_01_0684 - 5161218-5161427,5161509-5161616,5162217-5162390,516...    29   1.5  
09_01_0145 + 2175204-2175364,2175510-2175908,2175947-2176117,217...    27   3.6  

>01_06_0214 +
           27595125-27595200,27595298-27595494,27596077-27596095,
           27596257-27596309,27596642-27596719,27596836-27597116,
           27598089-27598194,27599029-27599076,27599208-27599255,
           27600013-27600027
          Length = 306

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -3

Query: 127 H*ITQLCFHLEQSVQMELSAQFFDCKQSALVREQIAQRN 11
           H I  LC HLE+    E     + CKQ+  V   +AQ N
Sbjct: 71  HDIASLCAHLEEDHPYEPHTSAYFCKQATGVDFAMAQNN 109


>07_01_0684 -
           5161218-5161427,5161509-5161616,5162217-5162390,
           5162515-5162643,5162722-5163009,5163114-5163346,
           5164235-5165060
          Length = 655

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 1   ARGRFAERFALEREHSAYSRKTEHSTPFEQIALNGNK 111
           A   FAER A+ +    Y+RK+ +      +ALNG K
Sbjct: 417 AASHFAERMAVRKSWMMYTRKSTNIVARFFVALNGKK 453


>09_01_0145 +
           2175204-2175364,2175510-2175908,2175947-2176117,
           2176323-2176434
          Length = 280

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 252 DVRTRLASHKIKLFVW 205
           D RT LAS+K+ LF+W
Sbjct: 31  DTRTHLASNKVTLFLW 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,330,893
Number of Sequences: 37544
Number of extensions: 97515
Number of successful extensions: 166
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)