Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B13
         (372 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.1  
SB_15833| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.5  

>SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 897

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 86  SNGVECSVFRL*AECSRSRANRSAK 12
           +NG+ C   R    C RS ANR AK
Sbjct: 384 TNGINCQSHRQKISCKRSSANRPAK 408


>SB_15833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 775

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = +1

Query: 13  FAERF--ALEREHSAYSRKTEHSTPFEQIALNGNKVE 117
           FAE F   +E  HS + +  +H T  +   + G K +
Sbjct: 118 FAELFDPVIEERHSGFKKSDKHKTDLDSSKIRGGKFD 154


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,046,185
Number of Sequences: 59808
Number of extensions: 134550
Number of successful extensions: 275
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 607387585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)