Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B13
         (372 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X79981-1|CAA56306.1|  784|Homo sapiens VE-cadherin protein.            32   0.51 
X59796-1|CAA42468.1|  780|Homo sapiens cadherin-5 protein.             32   0.51 
U84722-1|AAB41796.1|  784|Homo sapiens vascular endothelial cadh...    32   0.51 
BC117520-1|AAI17521.1|  669|Homo sapiens CDH5 protein protein.         32   0.51 
BC096365-1|AAH96365.1|  662|Homo sapiens CDH5 protein protein.         32   0.51 
BC096364-1|AAH96364.3|  669|Homo sapiens CDH5 protein protein.         32   0.51 
BC096363-1|AAH96363.1|  669|Homo sapiens CDH5 protein protein.         32   0.51 
AB209908-1|BAD93145.1|  807|Homo sapiens cadherin 5, type 2 prep...    32   0.51 
AB035304-1|BAA87418.1|  784|Homo sapiens cadherin-5 protein.           32   0.51 

>X79981-1|CAA56306.1|  784|Homo sapiens VE-cadherin protein.
          Length = 784

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +2

Query: 149 TKTVFINLF*KRDNYLFFTQTK-SFIL*LAKRVLTSLNELFYD 274
           T TV + L    DN+ FFTQTK +F++    RV TS+  LF +
Sbjct: 241 TATVLVTLQDINDNFPFFTQTKYTFVVPEDTRVGTSVGSLFVE 283


>X59796-1|CAA42468.1|  780|Homo sapiens cadherin-5 protein.
          Length = 780

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +2

Query: 149 TKTVFINLF*KRDNYLFFTQTK-SFIL*LAKRVLTSLNELFYD 274
           T TV + L    DN+ FFTQTK +F++    RV TS+  LF +
Sbjct: 237 TATVLVTLQDINDNFPFFTQTKYTFVVPEDTRVGTSVGSLFVE 279


>U84722-1|AAB41796.1|  784|Homo sapiens vascular endothelial
           cadherin protein.
          Length = 784

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +2

Query: 149 TKTVFINLF*KRDNYLFFTQTK-SFIL*LAKRVLTSLNELFYD 274
           T TV + L    DN+ FFTQTK +F++    RV TS+  LF +
Sbjct: 241 TATVLVTLQDINDNFPFFTQTKYTFVVPEDTRVGTSVGSLFVE 283


>BC117520-1|AAI17521.1|  669|Homo sapiens CDH5 protein protein.
          Length = 669

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +2

Query: 149 TKTVFINLF*KRDNYLFFTQTK-SFIL*LAKRVLTSLNELFYD 274
           T TV + L    DN+ FFTQTK +F++    RV TS+  LF +
Sbjct: 241 TATVLVTLQDINDNFPFFTQTKYTFVVPEDTRVGTSVGSLFVE 283


>BC096365-1|AAH96365.1|  662|Homo sapiens CDH5 protein protein.
          Length = 662

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +2

Query: 149 TKTVFINLF*KRDNYLFFTQTK-SFIL*LAKRVLTSLNELFYD 274
           T TV + L    DN+ FFTQTK +F++    RV TS+  LF +
Sbjct: 241 TATVLVTLQDINDNFPFFTQTKYTFVVPEDTRVGTSVGSLFVE 283


>BC096364-1|AAH96364.3|  669|Homo sapiens CDH5 protein protein.
          Length = 669

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +2

Query: 149 TKTVFINLF*KRDNYLFFTQTK-SFIL*LAKRVLTSLNELFYD 274
           T TV + L    DN+ FFTQTK +F++    RV TS+  LF +
Sbjct: 241 TATVLVTLQDINDNFPFFTQTKYTFVVPEDTRVGTSVGSLFVE 283


>BC096363-1|AAH96363.1|  669|Homo sapiens CDH5 protein protein.
          Length = 669

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +2

Query: 149 TKTVFINLF*KRDNYLFFTQTK-SFIL*LAKRVLTSLNELFYD 274
           T TV + L    DN+ FFTQTK +F++    RV TS+  LF +
Sbjct: 241 TATVLVTLQDINDNFPFFTQTKYTFVVPEDTRVGTSVGSLFVE 283


>AB209908-1|BAD93145.1|  807|Homo sapiens cadherin 5, type 2
           preproprotein variant protein.
          Length = 807

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +2

Query: 149 TKTVFINLF*KRDNYLFFTQTK-SFIL*LAKRVLTSLNELFYD 274
           T TV + L    DN+ FFTQTK +F++    RV TS+  LF +
Sbjct: 264 TATVLVTLQDINDNFPFFTQTKYTFVVPEDTRVGTSVGSLFVE 306


>AB035304-1|BAA87418.1|  784|Homo sapiens cadherin-5 protein.
          Length = 784

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +2

Query: 149 TKTVFINLF*KRDNYLFFTQTK-SFIL*LAKRVLTSLNELFYD 274
           T TV + L    DN+ FFTQTK +F++    RV TS+  LF +
Sbjct: 241 TATVLVTLQDINDNFPFFTQTKYTFVVPEDTRVGTSVGSLFVE 283


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,463,459
Number of Sequences: 237096
Number of extensions: 549362
Number of successful extensions: 724
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2421480012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)