Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B13
         (372 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039044-8|AAG24129.1|  717|Caenorhabditis elegans Nuclear hormo...    26   7.5  
U23511-3|AAC46790.1|  636|Caenorhabditis elegans Small protein 6...    26   9.9  
AF104017-1|AAD12261.1|  636|Caenorhabditis elegans serine-threon...    26   9.9  

>AF039044-8|AAG24129.1|  717|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 83 protein.
          Length = 717

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 370 PSSCQYYNSIRKQCYQLFRNNHTRQ 296
           PSSCQ+ NS+ K  +++   N  R+
Sbjct: 510 PSSCQFENSLEKMTFKVEELNSKRK 534


>U23511-3|AAC46790.1|  636|Caenorhabditis elegans Small protein 6
           protein.
          Length = 636

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +2

Query: 2   HEVVSLSDLLSNESTLLTVEKL 67
           HE+ SLSD L  E TL T E L
Sbjct: 344 HELGSLSDYLCREETLTTDEAL 365


>AF104017-1|AAD12261.1|  636|Caenorhabditis elegans serine-threonine
           kinase SMA-6 protein.
          Length = 636

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +2

Query: 2   HEVVSLSDLLSNESTLLTVEKL 67
           HE+ SLSD L  E TL T E L
Sbjct: 344 HELGSLSDYLCREETLTTDEAL 365


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,937,137
Number of Sequences: 27780
Number of extensions: 108807
Number of successful extensions: 174
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)