Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B11
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3 |Sc...    30   0.27 
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    29   0.48 
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    28   1.1  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    27   1.5  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      26   3.4  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    26   4.5  

>SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 297

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 349 NNIM-EGVRILNEQLQALAKLQSTEQPVILTLSASKISENVNSSY 480
           N IM +G+RIL E+L  L +    EQP  L+ +   + EN   ++
Sbjct: 242 NEIMVQGLRILQEKLAVLVRDLDEEQPTQLSANELNMEENAEMNW 286


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
            Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
 Frame = +1

Query: 280  EDNHYPHQLKSLTETLQEALDGFNNIMEGVRILNEQLQALAKLQSTEQPVILTLS-ASKI 456
            E N Y H+L   T  L+++ + +N    GV++  EQL+   +LQ+ +Q ++   S  S I
Sbjct: 798  EFNQYKHKLDEFTPILEKSENDYN----GVKLECEQLE--GELQNHQQSLVQGESTTSLI 851

Query: 457  SENVNSSYKSLLREYRLEQIITENI 531
               +     SL+ E    + +TE I
Sbjct: 852  KTEIAELELSLVNEEHNRKKLTELI 876


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +1

Query: 343  GFNNIMEGVRILNEQLQALAKLQSTEQPVILTLSA 447
            G  NI   VRI NE+LQ L++    ++P++L + A
Sbjct: 1177 GMYNIF--VRIFNEELQLLSQPVDLDEPILLIVDA 1209


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 300 VGVMVIFIILEIQNCYCFTNL 238
           VG++++F+ + I  CY  TNL
Sbjct: 49  VGIIILFLYIMIVTCYVLTNL 69


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +1

Query: 343 GFNNIMEGVRILNEQLQALAKLQSTEQPVILTLSASKISENVNSSYKSLLREYR 504
           G + I EGV +   + QA  ++Q+    V++     K + N+ +SY +  ++ R
Sbjct: 13  GSDEIFEGVNLDELEQQAQTQVQAQSSQVVVPSEKQKQNLNLPNSYTNSSQKVR 66


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
 Frame = +1

Query: 319 ETLQEAL--DGFNNIMEGVRI-LNEQLQ-ALAKLQSTEQPVI-LTLSASKISENVNSSYK 483
           ETL E L  D   + +  +R+ L+E+LQ ++ KL + ++      LS  +  +++NSS  
Sbjct: 23  ETLHELLPEDITYDDLGSLRLSLSERLQESVKKLDANKKTYEDAKLSMGEKMDDLNSSIV 82

Query: 484 SLLREYRLEQIITEN 528
           SLL+E    Q + EN
Sbjct: 83  SLLQELSTLQSVAEN 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,233,074
Number of Sequences: 5004
Number of extensions: 42279
Number of successful extensions: 146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)