Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_B11
(571 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373... 39 0.003
05_02_0014 - 5602425-5602481,5603218-5603307,5603711-5603950 31 0.65
04_04_1027 - 30216859-30217212,30218769-30219178,30219395-30219800 31 0.65
07_03_0312 + 16606724-16606796,16606885-16607015,16607105-166072... 29 2.0
03_02_0913 + 12344096-12344125,12344284-12345970,12346243-123465... 29 2.0
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914... 29 2.6
07_03_0635 + 20151861-20152249,20152589-20152709,20154914-201549... 29 3.4
11_08_0024 + 27747449-27747940,27748141-27750177 27 8.0
11_08_0009 + 27600881-27602592,27602665-27603008,27603159-276038... 27 8.0
04_04_0859 + 28805836-28805842,28806405-28806492,28807474-288075... 27 8.0
>12_02_0953 - 24736642-24736673,24737104-24737188,24737267-24737386,
24737484-24737549,24737629-24737799,24737901-24737999,
24738075-24738186,24738282-24738343,24738412-24738483,
24738583-24738681,24738764-24738997,24739104-24739178,
24739299-24739386,24739478-24739638,24739734-24739841,
24739934-24741922,24742007-24742279,24742957-24743295,
24743449-24745038,24745166-24745241,24745333-24745412,
24745614-24745679,24745761-24745830,24745899-24746134,
24746149-24746319,24746915-24747097,24747176-24747241,
24747326-24747389,24747472-24747530,24747612-24747699,
24747799-24747891,24747956-24748116,24748215-24748307,
24748405-24748518,24748654-24748773,24748852-24748935,
24749016-24749171,24749518-24750154,24752874-24752929
Length = 2815
Score = 38.7 bits (86), Expect = 0.003
Identities = 31/132 (23%), Positives = 63/132 (47%)
Frame = +1
Query: 160 SKIVFTHIANLHRLMIDWVKIRDKGLKICKAITILNLENYEDNHYPHQLKSLTETLQEAL 339
S ++F+ + + +++MID+ ++ ++ + + +L+ EN L+S E+LQ L
Sbjct: 1914 SAVIFSLLDDSNKIMIDFDNLKQNKDELMENLHVLSEENLNLRSVVGSLESSIESLQTEL 1973
Query: 340 DGFNNIMEGVRILNEQLQALAKLQSTEQPVILTLSASKISENVNSSYKSLLREYRLEQII 519
DG + ++ + + KL+S + ++ SEN N L R EQ++
Sbjct: 1974 DGKTKALMELQYSHTTILEEFKLKSKATELGVSRENDLRSEN-NLLKHEYLDIVRKEQMM 2032
Query: 520 TENIAHCRDENL 555
E +A+ E L
Sbjct: 2033 AELVANLDSEKL 2044
>05_02_0014 - 5602425-5602481,5603218-5603307,5603711-5603950
Length = 128
Score = 31.1 bits (67), Expect = 0.65
Identities = 16/85 (18%), Positives = 38/85 (44%)
Frame = +1
Query: 208 DWVKIRDKGLKICKAITILNLENYEDNHYPHQLKSLTETLQEALDGFNNIMEGVRILNEQ 387
D+ R+ +++ K + L ++ D+HYP E + ++ N + G L +
Sbjct: 39 DYFANREDAIRLNKEAQVEVLGHWSDHHYPSHTDLDDEDWKLEINQSNEVYPGETELKKD 98
Query: 388 LQALAKLQSTEQPVILTLSASKISE 462
+ + S E P++ +++S+
Sbjct: 99 ATSRLSINSEEYPIVYVSLFTQVSD 123
>04_04_1027 - 30216859-30217212,30218769-30219178,30219395-30219800
Length = 389
Score = 31.1 bits (67), Expect = 0.65
Identities = 18/74 (24%), Positives = 36/74 (48%)
Frame = +1
Query: 328 QEALDGFNNIMEGVRILNEQLQALAKLQSTEQPVILTLSASKISENVNSSYKSLLREYRL 507
+ LD ++ E R+ Q+Q++AKL + P +T + ++ V +SY + + ++
Sbjct: 238 KNGLDYLFHLYEQCRLFLLQVQSMAKLHGHKSPTKVTNQVFRYAKKVGASY---INKPKM 294
Query: 508 EQIITENIAHCRDE 549
+ HC DE
Sbjct: 295 RHYVHCYALHCLDE 308
>07_03_0312 +
16606724-16606796,16606885-16607015,16607105-16607274,
16607365-16607511,16608248-16608299,16608725-16608899,
16609523-16609605,16610528-16610740,16611850-16611981,
16612517-16612652,16613218-16613273,16613868-16613910,
16613990-16614435
Length = 618
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +1
Query: 223 RDKGLKICKAITILNLENYEDNHYPHQLKSLTETLQEALDGFNNIMEGVRILNEQLQ 393
+++ ++ CKA N+ +Y+D H Q + L T E +NN+ +R E +Q
Sbjct: 135 QEEAIRFCKAHAYTNVFSYQD-HLSGQRRFLVSTYDEFWKRYNNMDPQIRHHYEVIQ 190
>03_02_0913 +
12344096-12344125,12344284-12345970,12346243-12346573,
12346712-12347567,12347760-12347883,12348469-12348688,
12348771-12349229,12349318-12349519
Length = 1302
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -3
Query: 326 RVSVRDFNWWG*WLSS*FSRFRIVIALQIFKPLSLIFTQSIIR 198
R + +DF ++G L FS VI QI P+SL T ++R
Sbjct: 449 RENRKDFKFYGIALEIFFSFLSSVIIFQIMIPISLYITMELVR 491
>10_06_0105 - 10790092-10790323,10791092-10791234,10791322-10791429,
10791796-10791903,10793133-10797686,10798347-10798461,
10799597-10799724,10799843-10800043,10800158-10800227,
10801233-10801314,10801433-10801556,10801761-10801778
Length = 1960
Score = 29.1 bits (62), Expect = 2.6
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Frame = +1
Query: 301 QLKSLTETLQEALDGFNNIMEGVRILNEQLQALAKLQSTEQPVILTLSASKIS--ENVNS 474
QLK L L+E +D + + V ILN L++ + Q TE +L S +++ + N
Sbjct: 1432 QLKVLLTNLEEQVDDLRSTKDEVEILNMVLKSKLEEQRTEILSLLQNSGHELANFKEQNK 1491
Query: 475 SYKSLLREYRLEQIITENIA-HCRD 546
L E L+ +N++ H R+
Sbjct: 1492 DLTQKLAEQTLKAEEFKNLSIHLRE 1516
>07_03_0635 + 20151861-20152249,20152589-20152709,20154914-20154996,
20155819-20155903,20155987-20156277,20156555-20156645,
20157380-20158280,20158401-20158561,20158759-20158862,
20159040-20159205,20159283-20159378,20159694-20159800,
20160443-20160775,20161393-20161599,20161774-20161857,
20162887-20163020,20163166-20163393,20163541-20163712,
20164301-20164555,20164647-20164919
Length = 1426
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -2
Query: 189 VGYVCKYYFGYAILIFVWCCYLFGCEITC*LYFRRR 82
+GYV +FGY I+ F +LFG I C L F++R
Sbjct: 1396 LGYVVLAHFGYVIIFF----FLFGYGIKC-LNFQKR 1426
>11_08_0024 + 27747449-27747940,27748141-27750177
Length = 842
Score = 27.5 bits (58), Expect = 8.0
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +1
Query: 235 LKICKAITILNLE-NYEDNHYPHQLKSLTETLQEALDGFNNIMEGVRILNEQLQALAKLQ 411
L C+ +++L ++ NY + P + +L+ TLQ + NNI + L +L L
Sbjct: 372 LSNCRKLSVLEIDSNYFTGNLPDYVGNLSSTLQAFIARRNNISGVLPSTVWNLTSLKYLD 431
Query: 412 STEQPVILTLSAS 450
++ + T+S S
Sbjct: 432 LSDNQLHSTISES 444
>11_08_0009 +
27600881-27602592,27602665-27603008,27603159-27603806,
27603908-27604296
Length = 1030
Score = 27.5 bits (58), Expect = 8.0
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +1
Query: 235 LKICKAITILNLE-NYEDNHYPHQLKSLTETLQEALDGFNNIMEGVRILNEQLQALAKLQ 411
L C+ +++L ++ NY + P + +L+ TLQ + NNI + L +L L
Sbjct: 445 LSNCRKLSVLEIDSNYFTGNLPDYVGNLSSTLQAFIARRNNISGVLPSTVWNLTSLKYLD 504
Query: 412 STEQPVILTLSAS 450
++ + T+S S
Sbjct: 505 LSDNQLHSTISES 517
>04_04_0859 + 28805836-28805842,28806405-28806492,28807474-28807558,
28807638-28807763,28807819-28807968,28808497-28808541,
28808612-28808875,28809843-28809887,28810395-28810430,
28812048-28812816,28813063-28813925,28814024-28814182,
28814440-28814558,28815356-28815417,28816677-28816805,
28817395-28817460,28817757-28817890,28818025-28818162,
28818630-28818889,28818996-28819107,28819590-28819675,
28820655-28820735,28822841-28822928,28823222-28823260,
28823847-28823964,28824063-28824130,28824884-28824981,
28825238-28825397,28825691-28825816,28825876-28825945,
28826046-28826449
Length = 1664
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 463 NVNSSYKSLLREYRLEQIITENIAHCRDENL 555
++ +S +++LREY L +++TE C E L
Sbjct: 1171 DMRTSLQNMLREYTLNEVVTEQDKSCLMEAL 1201
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,460,274
Number of Sequences: 37544
Number of extensions: 274618
Number of successful extensions: 714
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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