Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B11
         (571 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54676| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.38 
SB_34014| Best HMM Match : MFS_1 (HMM E-Value=0.18)                    31   0.50 
SB_3932| Best HMM Match : Spectrin (HMM E-Value=5.2e-17)               31   0.50 
SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)                     31   0.66 
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.66 
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              29   2.0  
SB_16793| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_7770| Best HMM Match : Aldolase_II (HMM E-Value=2.6e-12)            29   2.7  
SB_31648| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_31644| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_8000| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.5  
SB_48647| Best HMM Match : Pencillinase_R (HMM E-Value=0.17)           28   4.7  
SB_1123| Best HMM Match : SKIP_SNW (HMM E-Value=1.9)                   28   4.7  
SB_56783| Best HMM Match : YicC_N (HMM E-Value=8.6e-07)                28   4.7  
SB_43382| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_23026| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_18871| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   4.7  
SB_45045| Best HMM Match : Kinesin (HMM E-Value=0)                     28   6.2  
SB_55596| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-05)                 27   8.2  
SB_1137| Best HMM Match : CC (HMM E-Value=2)                           27   8.2  

>SB_54676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 926

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 76  SKTPSKVESTSNFTAKEIATPNKDQNGISKIVFTHIAN 189
           SK P  +  T NF  K   T N+D +G++  ++T  AN
Sbjct: 127 SKNPFSLHRTKNFYLKFFTTTNQDASGLTPFLYTMKAN 164


>SB_34014| Best HMM Match : MFS_1 (HMM E-Value=0.18)
          Length = 195

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 15/56 (26%), Positives = 21/56 (37%)
 Frame = -2

Query: 273 LEIQNCYCFTNLQTFVSNFYPINHQAM*VGYVCKYYFGYAILIFVWCCYLFGCEIT 106
           L + NC+    L   +  F      A  VG +      +   +  WCC  FGC  T
Sbjct: 37  LSLSNCFAIM-LPVLIQEFNETRENAAWVGSIAYSMSYFCAPLSAWCCVRFGCRRT 91


>SB_3932| Best HMM Match : Spectrin (HMM E-Value=5.2e-17)
          Length = 1426

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 434 RITGCSVDCNLARACSCSFSILTPSIILLKP 342
           R+  C+ +C+  R+C+     + PS I+LKP
Sbjct: 534 RVRSCATECHRVRSCATECHRVRPSAIILKP 564


>SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)
          Length = 2155

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
 Frame = +1

Query: 262  LNLENYEDNHYPHQLKSLTETLQEALDGF---NNIMEGVRILNEQLQALAKLQSTEQPVI 432
            L L   E     H L+ L E LQEA+      +  +  +RI N++++        + PVI
Sbjct: 1096 LQLSVKEKLENEHILRGLREDLQEAMSDKQIKDRALHDLRIENDRMRKQLPTSGKQLPVI 1155

Query: 433  LTLSASKISE--NVNSSYKS 486
            L     ++SE  +++  YK+
Sbjct: 1156 LPFEIRQVSERSSIDEEYKT 1175


>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3760

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 34/145 (23%), Positives = 67/145 (46%), Gaps = 7/145 (4%)
 Frame = +1

Query: 97   ESTSNFTAKEIATPNKDQNGISKIVFTHIANLHRLMIDWVKIRDKGL-KICKAITILNLE 273
            E+   F   E+A    +   IS++  +   N+  L  + ++ RDK + ++ + I  L  +
Sbjct: 2343 EAEQKFEKLEVALSQLES--ISEVFHSGTENVDALKKE-IRDRDKSIGELTEKIETLEKD 2399

Query: 274  NY----EDNHYPHQLKSLTETLQEALDGFNNIMEGVRILNEQLQA-LAKLQSTEQPVILT 438
            N     E      +LK  + +LQE L    N M+ +   NE+L+  +A ++ +   +  +
Sbjct: 2400 NSSVQSEYKETKEKLKKRSSSLQEKLGVSKNFMQKILDENEELKGRIADIEKSNASLSES 2459

Query: 439  L-SASKISENVNSSYKSLLREYRLE 510
            L S  K  E +   ++ L+ E + E
Sbjct: 2460 LESLRKTDEALKVKFEELMPEEKTE 2484


>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
 Frame = -2

Query: 276 ILEIQNCYCFTNLQTFVSNFYPINHQAM*VGYVCKYY-FGYAILIFVWCCYLFGCEIT 106
           +L    CYC+     +   +Y   +      Y C YY + Y      +CCY   C  T
Sbjct: 466 VLRYCYCYCYCYYYCYCYCYYYCYYYCYCYCYYCCYYCYCYYYYHHYYCCYYCCCSCT 523


>SB_16793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 462

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 159 YAILIFVWCCYLFGCEITC*LYFRRRL 79
           Y I+I  WCCY F    T  L ++++L
Sbjct: 61  YYIVIIAWCCYFFFISFTSDLPWKKQL 87


>SB_7770| Best HMM Match : Aldolase_II (HMM E-Value=2.6e-12)
          Length = 716

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +1

Query: 100 STSNFTAKEIATPNKDQNGISKIVFTHIANLHRLMIDWV 216
           +T++  A+   TP+ DQ G+S+   T  AN +R  + W+
Sbjct: 118 TTTSTRAQLFFTPDSDQKGVSRSHSTGRANTYRNRLKWL 156


>SB_31648| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 656

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 148 QNGISKIVFTHIANLHRLMIDWVKIRDKGLKI 243
           + G+S     HI N  RLM++W+K  +K L +
Sbjct: 13  RKGLSVSGHHHIVNRGRLMLEWLKQNEKSLPL 44


>SB_31644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 935

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
 Frame = +1

Query: 184 ANLHRLMIDWVKIRDKGLKICKAITILNL-ENYEDNHYP---HQLKSLTETLQEALDGFN 351
           +++ +LMID  K+++  LK    +T+L+L +  +++        L++LT +L EA +   
Sbjct: 162 SDIRKLMIDRDKLKEDFLKAKSELTVLSLRDGRKESEMALARSNLRTLTSSLSEANEKLL 221

Query: 352 NIMEGVRILNEQL 390
           ++ E    L  +L
Sbjct: 222 SMRENAGYLENEL 234


>SB_8000| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 937

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 416 VDCNLARACSCSFSILTPSIILLKP 342
           VDC  A  C C FS+L PS+    P
Sbjct: 366 VDCVCAFICLCRFSLLLPSLFCTGP 390


>SB_48647| Best HMM Match : Pencillinase_R (HMM E-Value=0.17)
          Length = 1084

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +1

Query: 376 LNEQLQALA-KLQSTEQPVILTLSASKISENVNSSYKSLLREYRLEQIITENIAHCRDEN 552
           L ++LQ+L  KLQ T+  +   +SA + +EN  S +++   E R   I   NI H    +
Sbjct: 222 LRKELQSLQDKLQHTDVSLKHHISAEEQAENRASKWETKYSEVRSHLIRALNIDHAEASS 281

Query: 553 L 555
           L
Sbjct: 282 L 282


>SB_1123| Best HMM Match : SKIP_SNW (HMM E-Value=1.9)
          Length = 204

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
 Frame = +1

Query: 475 SYKSLLREY----RLEQIITENIAHCRDENLLEVYI 570
           +YK  LR Y       Q ITEN+A  RD  LL  YI
Sbjct: 55  NYKWFLRPYIAIFESAQAITENVAKARDGGLLTEYI 90


>SB_56783| Best HMM Match : YicC_N (HMM E-Value=8.6e-07)
          Length = 251

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
 Frame = +1

Query: 223 RDKGLKICK--AITILNLENYEDNHY---PHQLKSLTETLQEALDGFNNIMEGVRILNEQ 387
           +D+G  + K   + I N+ +Y +      P ++K++ + L  A+D     ++  R   E 
Sbjct: 110 KDEGKSLEKDFQLRITNIRSYMEEALILDPERIKNIKDRLLTAIDELKVNVDENRFEQEL 169

Query: 388 LQALAKLQSTEQPVILT 438
           +  L KL  TE+ V LT
Sbjct: 170 IYYLEKLDITEEKVRLT 186


>SB_43382| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 861

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -2

Query: 336 SFLEGFGERFQLVGVMVIFIILEIQNCYCFTNLQTFVSN 220
           SFL   GE+F +VG +++ + + ++ C C  +    V++
Sbjct: 675 SFLVVNGEKFTVVGTVLLLLKMVVEYCQCVDDTPMLVTD 713


>SB_23026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 178

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
 Frame = +1

Query: 238 KICKAITILNLENYEDNHYPHQLKSLTETLQEALDGFNNIMEGVRILNEQLQALAKLQST 417
           K+ KA+    L+    N     L++  ET++E     + I    R L E L   AKL+  
Sbjct: 45  KLKKALESYELDCQAKNKEITSLRATVETMEELQQDKHRIEAINRELQEALDHEAKLRKE 104

Query: 418 EQP------VILTLSASKISENVNSSYKSLLREYRLEQIIT 522
            +         L L+  + +E   S+ + L+ E+  +Q+ T
Sbjct: 105 SEEKHSNAIKELLLAVKEATEKATSAQQDLVSEHSSDQVTT 145


>SB_18871| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 546

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
 Frame = +1

Query: 475 SYKSLLREY----RLEQIITENIAHCRDENLLEV 564
           +YK  LR Y       Q ITEN+A  RDE+L ++
Sbjct: 45  NYKWFLRPYIAIFESAQAITENVAKARDEDLTDI 78


>SB_45045| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 1260

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
 Frame = +1

Query: 256 TILNLENYEDNHYPHQLKSLTETLQEALDG---FNNIMEGVRI---LNEQLQAL-AKLQS 414
           TI  L      H P +  SLT  LQ++L G    + +++ V++   L ++LQAL  +++S
Sbjct: 526 TIHALSEGTRTHIPFRNSSLTRILQDSLGGNCKTSFVIDHVKLAADLRKRLQALELEMKS 585

Query: 415 TEQPVILTLSASKISENVNSSYKSLLRE 498
            +      L A K  + V  S K  L E
Sbjct: 586 QKDVFDKQLMALKTDQRVELSEKDSLYE 613


>SB_55596| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-05)
          Length = 412

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 21/78 (26%), Positives = 35/78 (44%)
 Frame = +1

Query: 319 ETLQEALDGFNNIMEGVRILNEQLQALAKLQSTEQPVILTLSASKISENVNSSYKSLLRE 498
           E L  AL    N    V + ++Q+      Q  EQ    +LS +  +E+ ++   + +R 
Sbjct: 217 ENLLVALANSKNDFPSVTVRHKQIN-----QQEEQEGATSLSRNVQAESSSAKDFTHIRS 271

Query: 499 YRLEQIITENIAHCRDEN 552
           YR  +  T  +AH R  N
Sbjct: 272 YRYRKHFTTRLAHFRSTN 289


>SB_1137| Best HMM Match : CC (HMM E-Value=2)
          Length = 410

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
 Frame = -3

Query: 449 LADKVRITGCSVDCNLARACSCSF----SILTPSIILLKPSKA--SWRVSVRDFNWWG 294
           LAD     GC+  C  +RA   +F    +ILT +++L  P KA   WR+  R   +WG
Sbjct: 85  LADGPNGIGCASKC-FSRAYFYNFVSRNAILTMALVLAVPEKALKYWRIQKR--KYWG 139


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,665,963
Number of Sequences: 59808
Number of extensions: 304447
Number of successful extensions: 771
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)