Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_B11
(571 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64858-2|AAN84866.1| 1310|Caenorhabditis elegans Roller: helical... 30 1.3
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical... 30 1.3
U41272-7|AAY86277.1| 240|Caenorhabditis elegans Hypothetical pr... 30 1.3
AL032675-1|CAA21779.1| 963|Caenorhabditis elegans Hypothetical ... 30 1.3
AF106577-10|AAC78189.1| 796|Caenorhabditis elegans Hypothetical... 29 1.8
AC025716-3|AAK39618.1| 690|Caenorhabditis elegans Hypothetical ... 29 1.8
AC006830-1|AAK68610.3| 802|Caenorhabditis elegans Hypothetical ... 29 2.4
U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical pr... 29 3.1
U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z36753-17|CAA85342.1| 821|Caenorhabditis elegans Hypothetical p... 27 7.2
AF240692-1|AAF61239.1| 821|Caenorhabditis elegans LIN-5 protein. 27 7.2
Z92838-5|CAB07404.2| 578|Caenorhabditis elegans Hypothetical pr... 27 9.5
AF067945-12|AAC17680.1| 840|Caenorhabditis elegans Patched rela... 27 9.5
AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical... 27 9.5
>U64858-2|AAN84866.1| 1310|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 3, isoform c
protein.
Length = 1310
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 151 NGISKIVFTHIANLHRLMIDWVKIRDKGLKICKAITI 261
NG+ + T + + + IDW K DKGLK + I
Sbjct: 163 NGLIYVDLTEDSQCNEVRIDWTKFGDKGLKDISSFAI 199
>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 3, isoform a
protein.
Length = 2456
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 151 NGISKIVFTHIANLHRLMIDWVKIRDKGLKICKAITI 261
NG+ + T + + + IDW K DKGLK + I
Sbjct: 1309 NGLIYVDLTEDSQCNEVRIDWTKFGDKGLKDISSFAI 1345
>U41272-7|AAY86277.1| 240|Caenorhabditis elegans Hypothetical
protein T03G11.9 protein.
Length = 240
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -2
Query: 369 DPFHNIVEAI*SFLEGFGERFQLVGVMVIFIILEIQNCYCFTNLQTFV 226
D F + + + L FG + ++V FI+ EI C CF L +V
Sbjct: 129 DIFLIVANTVVAILMMFGLYYDKASLLVPFIVSEITQCVCFFILANYV 176
>AL032675-1|CAA21779.1| 963|Caenorhabditis elegans Hypothetical
protein VT23B5.1 protein.
Length = 963
Score = 29.9 bits (64), Expect = 1.3
Identities = 20/80 (25%), Positives = 33/80 (41%)
Frame = +1
Query: 163 KIVFTHIANLHRLMIDWVKIRDKGLKICKAITILNLENYEDNHYPHQLKSLTETLQEALD 342
+I+F I+ + + D I G I + E YED+H P + + + E+ D
Sbjct: 92 EIIFNLISAIMQPQCDSRSILKIGQSIAATLPTSESECYEDSHLPFHISEIQKLFIESSD 151
Query: 343 GFNNIMEGVRILNEQLQALA 402
+ V I N L +A
Sbjct: 152 PPPEALHQVYIRNRLLNIIA 171
>AF106577-10|AAC78189.1| 796|Caenorhabditis elegans Hypothetical
protein F46F5.11 protein.
Length = 796
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 249 FTNLQTFVSNFYPINHQAM*VGYVCKYYFGYAILIFV 139
FT + F + YPIN+ + + + YFGY L V
Sbjct: 532 FTEIDNFTTTLYPINYVHLNEAEIHQGYFGYHCLTVV 568
>AC025716-3|AAK39618.1| 690|Caenorhabditis elegans Hypothetical
protein Y39G10AR.10 protein.
Length = 690
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/64 (28%), Positives = 37/64 (57%)
Frame = +1
Query: 238 KICKAITILNLENYEDNHYPHQLKSLTETLQEALDGFNNIMEGVRILNEQLQALAKLQST 417
K +A+T ++ EN + H+L+S+ + Q ALD N +E + NE+ + +++++
Sbjct: 120 KFQEALTRISDENTKLQKDCHELESIRQCAQFALDNCNEELEKTQTENEEHE--SRIETL 177
Query: 418 EQPV 429
E+ V
Sbjct: 178 EREV 181
>AC006830-1|AAK68610.3| 802|Caenorhabditis elegans Hypothetical
protein ZK105.3 protein.
Length = 802
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 249 FTNLQTFVSNFYPINHQAM*VGYVCKYYFGYAILIFV 139
FTN+ F S +PIN+ + + K YF Y + V
Sbjct: 535 FTNVDNFTSTIFPINYVHVNPAEIHKGYFAYHCVTLV 571
>U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical
protein C18C4.5b protein.
Length = 1046
Score = 28.7 bits (61), Expect = 3.1
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = +1
Query: 301 QLKSLTETLQEALDGFNNIMEGVRILNEQL-----QALAKLQSTEQPVILTLSASKISEN 465
QLKS ETL L+ N+ E ++ E+ + +L+ E +A +S N
Sbjct: 649 QLKSKNETLTTELEDSQNLCERLKAQYEKADKKYEETKVQLREAEDLADRLQAAQILSGN 708
Query: 466 VNSSYKSLLREYRLE 510
V S + + +E ++E
Sbjct: 709 VESKFSDMQKESKIE 723
>U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical
protein C18C4.5a protein.
Length = 1022
Score = 28.7 bits (61), Expect = 3.1
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = +1
Query: 301 QLKSLTETLQEALDGFNNIMEGVRILNEQL-----QALAKLQSTEQPVILTLSASKISEN 465
QLKS ETL L+ N+ E ++ E+ + +L+ E +A +S N
Sbjct: 649 QLKSKNETLTTELEDSQNLCERLKAQYEKADKKYEETKVQLREAEDLADRLQAAQILSGN 708
Query: 466 VNSSYKSLLREYRLE 510
V S + + +E ++E
Sbjct: 709 VESKFSDMQKESKIE 723
>Z36753-17|CAA85342.1| 821|Caenorhabditis elegans Hypothetical
protein T09A5.10 protein.
Length = 821
Score = 27.5 bits (58), Expect = 7.2
Identities = 22/75 (29%), Positives = 38/75 (50%)
Frame = +1
Query: 226 DKGLKICKAITILNLENYEDNHYPHQLKSLTETLQEALDGFNNIMEGVRILNEQLQALAK 405
D G + +A + +L +YE + Q + LTETL+ D + L EQL + K
Sbjct: 330 DNGKLMKQARELRDLNDYEFARFRQQEQELTETLRATQDQMAD-------LQEQLTGVEK 382
Query: 406 LQSTEQPVILTLSAS 450
++++ + +LSAS
Sbjct: 383 IRASLKSENESLSAS 397
>AF240692-1|AAF61239.1| 821|Caenorhabditis elegans LIN-5 protein.
Length = 821
Score = 27.5 bits (58), Expect = 7.2
Identities = 22/75 (29%), Positives = 38/75 (50%)
Frame = +1
Query: 226 DKGLKICKAITILNLENYEDNHYPHQLKSLTETLQEALDGFNNIMEGVRILNEQLQALAK 405
D G + +A + +L +YE + Q + LTETL+ D + L EQL + K
Sbjct: 330 DNGKLMKQARELRDLNDYEFARFRQQEQELTETLRATQDQMAD-------LQEQLTGVEK 382
Query: 406 LQSTEQPVILTLSAS 450
++++ + +LSAS
Sbjct: 383 IRASLKSENESLSAS 397
>Z92838-5|CAB07404.2| 578|Caenorhabditis elegans Hypothetical
protein T03D8.6 protein.
Length = 578
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
Frame = +1
Query: 283 DNHYPHQLKSLTET--LQEALD--GFNNIMEGVRILNEQLQA 396
D+ +P +K++ E+ LQ+ + GF I++GV +LN+ + A
Sbjct: 522 DDEFPINMKNILESEYLQKFRNTTGFEGIIQGVNVLNDGIYA 563
>AF067945-12|AAC17680.1| 840|Caenorhabditis elegans Patched related
family protein 15 protein.
Length = 840
Score = 27.1 bits (57), Expect = 9.5
Identities = 21/97 (21%), Positives = 41/97 (42%)
Frame = +1
Query: 262 LNLENYEDNHYPHQLKSLTETLQEALDGFNNIMEGVRILNEQLQALAKLQSTEQPVILTL 441
L +E+ + H+ +Q+ + E E + +I + L AL + Q+T + +L
Sbjct: 198 LGIESIDMVHFVYQIPAYNEHTSEEMS---------KIFEQSLTALLENQTTFDTSMFSL 248
Query: 442 SASKISENVNSSYKSLLREYRLEQIITENIAHCRDEN 552
S K NS+Y + ++ +A C +N
Sbjct: 249 SILKDEMQKNSTYTMPFISLTILLLLCFTVASCMTDN 285
>AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical
protein Y69A2AR.31 protein.
Length = 1219
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = +1
Query: 73 MSKTPSKVESTSNFTAKEI----ATPNKDQNGISKIVFTHIANLHRLMIDW 213
+S TP+ +T+ FT KD NG + +FTHI + R +DW
Sbjct: 929 ISTTPTAPTTTTVFTTHAPPPMEGCNTKDANG--REIFTHIGAIMRKYVDW 977
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,382,506
Number of Sequences: 27780
Number of extensions: 239375
Number of successful extensions: 802
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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