Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B11
         (571 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.6  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   4.9  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   6.5  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   6.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +1

Query: 139 NKDQNGISKIVFTHIANLHRLMIDWVKIRDKGLKICKAITILN 267
           N   + I    F  + NLH L +   K+R  G ++   + +LN
Sbjct: 368 NNSIDRIESNAFLPLYNLHTLELSDNKLRTVGAQLFNGLFVLN 410


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/37 (21%), Positives = 22/37 (59%)
 Frame = +1

Query: 241 ICKAITILNLENYEDNHYPHQLKSLTETLQEALDGFN 351
           + + I ++   + E+     +L+++T+T+   LDG++
Sbjct: 13  LLQMIHLIAWASLENTGISDRLENVTQTISRILDGYD 49


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 265 NLENYEDNHYPH 300
           N +N ++NHY H
Sbjct: 416 NFDNQDNNHYNH 427


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -2

Query: 162 GYAILIFVWCCYLFGCEITC*LYFRRRL 79
           GY +  F    Y  G E TC L   R L
Sbjct: 197 GYKVTGFEELAYKMGLESTCTLILGRHL 224


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,945
Number of Sequences: 438
Number of extensions: 3183
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)