Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B11
         (571 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43650.1 68415.m05425 Sas10/U3 ribonucleoprotein (Utp) family...    33   0.10 
At2g40690.1 68415.m05020 NAD-dependent glycerol-3-phosphate dehy...    30   1.2  
At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PS...    28   5.0  
At1g64550.1 68414.m07317 ABC transporter family protein similar ...    28   5.0  
At4g15075.1 68417.m02316 hypothetical protein                          27   6.7  
At3g07300.1 68416.m00869 eukaryotic translation initiation facto...    27   6.7  
At1g63020.1 68414.m07117 DNA-directed RNA polymerase alpha subun...    27   6.7  
At5g50630.1 68418.m06272 nodulin family protein similar to nodul...    27   8.8  
At5g50520.1 68418.m06257 nodulin family protein similar to nodul...    27   8.8  
At4g29230.1 68417.m04181 no apical meristem (NAM) family protein...    27   8.8  
At2g06630.1 68415.m00736 hypothetical protein similar to At2g121...    27   8.8  
At1g17910.1 68414.m02217 wall-associated kinase, putative contai...    27   8.8  

>At2g43650.1 68415.m05425 Sas10/U3 ribonucleoprotein (Utp) family
           protein contains Pfam profile PF04000: Sas10/Utp3
           family; contains Prosite PS00761: Signal peptidases I
           signature 3; weak similarity to PEBP2 beta-binding
           protein / charged amino acid rich leucine zipper
           factor-1 (GI:12061569) [Mus musculus]
          Length = 654

 Score = 33.5 bits (73), Expect = 0.10
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
 Frame = +1

Query: 217 KIRDKGLKICKAITILNLENYEDNHYPHQLKSLTE-TLQEALD-GFNNIMEGVRILNEQL 390
           +I DKG +  K+IT    +  +D H     K +   + +E +D  +++  E V +L+E  
Sbjct: 188 EISDKGKQATKSITDKKEKGDKDTHVEEIKKDINSLSKEEQMDVVYSSAPEIVGLLSELN 247

Query: 391 QALAKLQSTEQPVILTLSASKISENVNSSY 480
            A+ +L+S   PV+  L   +IS N  + Y
Sbjct: 248 DAVEELESKINPVMNKLKEGEISLNGLARY 277


>At2g40690.1 68415.m05020 NAD-dependent glycerol-3-phosphate
           dehydrogenase family protein low similarity to SP|Q26756
           Glycerol-3-phosphate dehydrogenase [NAD+], glycosomal
           (EC 1.1.1.8) {Trypanosoma brucei rhodesiense}; contains
           Pfam profile PF01210: NAD-dependent glycerol-3-phosphate
           dehydrogenase
          Length = 420

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 21/66 (31%), Positives = 34/66 (51%)
 Frame = +1

Query: 319 ETLQEALDGFNNIMEGVRILNEQLQALAKLQSTEQPVILTLSASKISENVNSSYKSLLRE 498
           ETL + L   N + EGV      + ALA+  + + PV+   + +KI +N  +  K++L  
Sbjct: 355 ETLDDILTSMNQVAEGVATAGAVI-ALAQKYNVKLPVL--TAVAKIIDNELTPTKAVLEL 411

Query: 499 YRLEQI 516
             L QI
Sbjct: 412 MNLPQI 417


>At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PSP)
           family protein / zinc knuckle (CCHC-type) family protein
           contains Pfam domains PF00098: Zinc knuckle, PF04046:
           PSP
          Length = 532

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3

Query: 312 SHRNPPRSFRWLQQYYGRGQN 374
           SHRN  RS RW QQ   RG +
Sbjct: 407 SHRNSSRSGRWQQQKTSRGHD 427


>At1g64550.1 68414.m07317 ABC transporter family protein similar to
           ABC transporter protein GB:AAF31030 GI:6899653 from
           [Leishmania major]
          Length = 715

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 349 NNIMEGVRILNEQLQALAKLQSTEQP 426
           N  +E  ++L E++Q LAK + TE+P
Sbjct: 254 NTDIERTKLLEEEIQILAKQRETEEP 279


>At4g15075.1 68417.m02316 hypothetical protein
          Length = 168

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = +1

Query: 160 SKIVFTHIANLHRLMIDWVKIRDKGLKICKAITILNLENYEDNHYPHQLKSLTETLQEAL 339
           SK++   + N H L+   + + D  +  C    ++ LEN + N+ P  L+S  ET    +
Sbjct: 54  SKLLVRFLENSHNLLELEIDLNDDHIDSCVVDPLVCLEN-QLNYVPECLRSNLETKWTGM 112

Query: 340 DG 345
            G
Sbjct: 113 HG 114


>At3g07300.1 68416.m00869 eukaryotic translation initiation factor
           2B family protein / eIF-2B family protein similar to
           SP|P49770 Translation initiation factor eIF-2B beta
           subunit (eIF-2B GDP-GTP exchange factor) {Homo sapiens};
           contains Pfam profile PF01008: Initiation factor 2
           subunit family
          Length = 407

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +1

Query: 310 SLTETLQ-EALDGFNNIMEGVRILNEQLQALAKLQSTEQPVILTLSASKISENVNSSYKS 486
           SLT  L+ + ++G N +++ +   +EQ+   A     +  VILTL +S+       + K 
Sbjct: 171 SLTRKLKHDVIEGVNQLIQEIAGCHEQIAEQAIEHIHQNEVILTLGSSRTVLEFLCAAKE 230

Query: 487 LLREYRL 507
             R +R+
Sbjct: 231 KKRSFRV 237


>At1g63020.1 68414.m07117 DNA-directed RNA polymerase alpha subunit
            family protein low similarity to RNA polymerase IIA
            largest subunit [Trypanosoma brucei] GI:162215; contains
            InterPro accession IPR000722: RNA polymerase, alpha
            subunit
          Length = 1453

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +1

Query: 439  LSASKISENVNSSYKSLLREYRLE--QIITENIAHCRDEN 552
            LSA  +  ++N  YKS  RE +L+   +  +N  HC  ++
Sbjct: 996  LSAESVVSSLNEQYKSRNRELKLDIVDLDIQNTNHCSSDD 1035


>At5g50630.1 68418.m06272 nodulin family protein similar to
           nodulin-like protein [Arabidopsis thaliana] GI:3329368,
           nodule-specific protein Nlj70 [Lotus japonicus]
           GI:3329366
          Length = 540

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = -3

Query: 230 LSLIF-TQSIIRRCKLAMCVNTILDMPF*SLFGVAISLAVKLLVDSTLEGVFDM 72
           L+L+F  + + R C+  +  +   D+ F +++G  + LAV LL    L+ VFDM
Sbjct: 191 LALLFIVRPVERSCRTNLRSD---DLRFLAIYGFCVVLAVYLLGLLVLQSVFDM 241


>At5g50520.1 68418.m06257 nodulin family protein similar to
           nodulin-like protein [Arabidopsis thaliana] GI:3329368,
           nodule-specific protein Nlj70 [Lotus japonicus]
           GI:3329366
          Length = 540

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = -3

Query: 230 LSLIF-TQSIIRRCKLAMCVNTILDMPF*SLFGVAISLAVKLLVDSTLEGVFDM 72
           L+L+F  + + R C+  +  +   D+ F +++G  + LAV LL    L+ VFDM
Sbjct: 191 LALLFIVRPVERSCRTNLRSD---DLRFLAIYGFCVVLAVYLLGLLVLQSVFDM 241


>At4g29230.1 68417.m04181 no apical meristem (NAM) family protein
           similar to NAM family proteins GP|12751304|,
           GP|6223650|, GP|9758909 - Arabidopsis
           thaliana,PIR2:T04621
          Length = 498

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 346 SHLKLLGGFR*EISTGGGNGYLHNSRD 266
           S L  +GG   E S+GGG G  H  RD
Sbjct: 228 SSLNAIGGGGGEASSGGGGGEYHMRRD 254


>At2g06630.1 68415.m00736 hypothetical protein similar to At2g12120,
           At1g45090, At2g05470, At5g28482
          Length = 231

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = +1

Query: 112 FTAKEIATPNKDQNGISKIVFTHI-ANLHRLMIDWVKIRDKGLKICKAITILNLENYEDN 288
           F A  + T  +D  G   ++  H+ +  H  +   +     G     A+  LNL  +E N
Sbjct: 96  FEALRVLTHERDIKGAINLLRPHVPSQAHATLACAILFIIDGNDYMGAM-FLNL--FERN 152

Query: 289 HYPHQLKSLTETLQEALD 342
           HYP + K + +  +E L+
Sbjct: 153 HYPFRTKEIRDLCEEFLE 170


>At1g17910.1 68414.m02217 wall-associated kinase, putative contains
           similarity to wall-associated kinase 4 GI:3355308 from
           [Arabidopsis thaliana]
          Length = 764

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = +1

Query: 397 LAKLQSTEQPVILTLSASKISENVNSSYKSLLREYRLEQIITENIAH-CRDENLLEV 564
           L +L + E+PVI TLS ++    +   ++  +RE RL +II   I + C+ E ++ V
Sbjct: 645 LVELITGEKPVI-TLSETQEITGLADYFRLAMRENRLFEIIDARIRNDCKLEQVIAV 700


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,683,597
Number of Sequences: 28952
Number of extensions: 220741
Number of successful extensions: 608
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)