Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_B10
(495 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont... 250 5e-67
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi... 248 1e-66
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near... 248 2e-66
At1g53180.1 68414.m06027 expressed protein 31 0.56
At5g23575.1 68418.m02766 transmembrane protein, putative similar... 29 1.3
At4g20380.3 68417.m02976 zinc finger protein (LSD1) identical to... 29 1.7
At4g20380.2 68417.m02974 zinc finger protein (LSD1) identical to... 29 1.7
At4g20380.1 68417.m02975 zinc finger protein (LSD1) identical to... 29 1.7
At4g02180.1 68417.m00290 DC1 domain-containing protein contains ... 29 2.3
At5g24280.1 68418.m02856 expressed protein ; expression supporte... 28 3.0
At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger) fa... 28 3.0
At2g01600.1 68415.m00084 epsin N-terminal homology (ENTH) domain... 28 3.0
At5g55800.1 68418.m06954 DC1 domain-containing protein contains ... 28 4.0
At5g02360.1 68418.m00159 DC1 domain-containing protein contains ... 27 5.3
At5g46660.1 68418.m05749 CHP-rich zinc finger protein, putative ... 27 6.9
At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR... 27 6.9
At5g13020.1 68418.m01492 emsy N terminus domain-containing prote... 27 6.9
At3g15115.1 68416.m01912 expressed protein 27 6.9
At4g12430.1 68417.m01967 trehalose-6-phosphate phosphatase, puta... 27 9.2
At2g41400.1 68415.m05109 expressed protein 27 9.2
At1g19510.1 68414.m02430 myb family transcription factor contain... 27 9.2
>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
contains Pfam profile: PF00826: Ribosomal L10
Length = 221
Score = 250 bits (611), Expect = 5e-67
Identities = 115/156 (73%), Positives = 128/156 (82%)
Frame = +1
Query: 28 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 207
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 208 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 387
SSEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 388 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAK 495
K GT ARV IGQ ++SVR D EALRRAK
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDNHGVHAQEALRRAK 156
>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
Wilm's tumor suppressor protein-related similar to tumor
suppressor GI:575354 from [Oryza sativa]
Length = 220
Score = 248 bits (608), Expect = 1e-66
Identities = 115/156 (73%), Positives = 128/156 (82%)
Frame = +1
Query: 28 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 207
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 208 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 387
SSEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 388 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAK 495
K GT ARV IGQ ++SVR D EALRRAK
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAK 156
>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
identical to ribosomal protein L10.e, Wilm's tumor
suppressor homologue, gi|17682 (Z15157), however
differences in sequence indicate this is a different
member of the L10 family
Length = 221
Score = 248 bits (607), Expect = 2e-66
Identities = 115/156 (73%), Positives = 128/156 (82%)
Frame = +1
Query: 28 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 207
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENV 60
Query: 208 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 387
SSEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 388 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAK 495
K GT ARV IGQ ++SVR D EALRRAK
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAK 156
>At1g53180.1 68414.m06027 expressed protein
Length = 358
Score = 30.7 bits (66), Expect = 0.56
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = +1
Query: 13 FVENTMGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGK 141
F EN RR +R RYC + PYP S P+ K+ D+GK
Sbjct: 20 FFENLFTRR-SRGLRYCHSDPYPSSSSTSTSPE-KMGDSDIGK 60
>At5g23575.1 68418.m02766 transmembrane protein, putative similar to
cleft lip and palate transmembrane protein 1 [Homo
sapiens] GI:4039014; contains Pfam profile PF05602:
Cleft lip and palate transmembrane protein 1 (CLPTM1)
Length = 593
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 438 RHNGLSNTHTRYCALGFPERTTHPSLEPISSSARQHFI 325
++NG H + GFP T P +P++S +R H +
Sbjct: 127 QNNGSLYAHIFFARSGFPIDPTDPEYQPLNSFSRTHAV 164
>At4g20380.3 68417.m02976 zinc finger protein (LSD1) identical to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 184
Score = 29.1 bits (62), Expect = 1.7
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -3
Query: 301 VVSSGCGTDLY----RSSLRGTCCNRYGLLPAPQNSAARTHQTLSARIVGSH 158
++ GC T L SS+R +CC L+PA N A + A+I H
Sbjct: 46 IICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGH 97
>At4g20380.2 68417.m02974 zinc finger protein (LSD1) identical to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 189
Score = 29.1 bits (62), Expect = 1.7
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -3
Query: 301 VVSSGCGTDLY----RSSLRGTCCNRYGLLPAPQNSAARTHQTLSARIVGSH 158
++ GC T L SS+R +CC L+PA N A + A+I H
Sbjct: 51 IICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGH 102
>At4g20380.1 68417.m02975 zinc finger protein (LSD1) identical to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 184
Score = 29.1 bits (62), Expect = 1.7
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -3
Query: 301 VVSSGCGTDLY----RSSLRGTCCNRYGLLPAPQNSAARTHQTLSARIVGSH 158
++ GC T L SS+R +CC L+PA N A + A+I H
Sbjct: 46 IICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGH 97
>At4g02180.1 68417.m00290 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 989
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +1
Query: 211 SEALEAGRIC--CNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSC 342
S+A+ G C C+ + K CG+ I+ HP H +++ C
Sbjct: 65 SKAVSVGYYCKSCDFFAHKKCGESSEFIQHPSHPNHTLQLRSSEGC 110
Score = 27.1 bits (57), Expect = 6.9
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 208 SSEALEAGRIC--CNKYLVKNCGKDQFHIRMRLHPFHVIRINK 330
S E++ G C C+ ++ K CG+ I HP H + +N+
Sbjct: 369 SLESVTDGFYCKSCDIFIHKKCGESSGIIDHSSHPDHTLELNR 411
>At5g24280.1 68418.m02856 expressed protein ; expression supported by
MPSS
Length = 1634
Score = 28.3 bits (60), Expect = 3.0
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 187 SDEYEQLSSEALEAGRICCNKYLV 258
SDEY + SEA GR N++LV
Sbjct: 1431 SDEYRKFQSEAASLGRSITNRFLV 1454
>At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 525
Score = 28.3 bits (60), Expect = 3.0
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -3
Query: 151 SLSFCPSRKYGSLGQAH 101
SLSFCPS Y S G+ H
Sbjct: 327 SLSFCPSNIYSSTGRVH 343
>At2g01600.1 68415.m00084 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to clathrin assembly protein AP180 (GI:6492344) [Xenopus
laevis]
Length = 571
Score = 28.3 bits (60), Expect = 3.0
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -1
Query: 375 THPSLEPISSSARQHFIDADDMEGV*S-HPDVELIFTA-VLYEVLVATD 235
T PS P S+ Q+FID DD+ G+ + PD +I L +V+TD
Sbjct: 358 TEPSPPPPPSANAQNFIDTDDLWGLNTGAPDTSVIEDQNALALAIVSTD 406
>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 578
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 235 ICCNKYLVKNCGKDQFHIRMRLHPFHVIRI 324
+ C K K C + F I HPFH +R+
Sbjct: 107 LICEKMFHKECVESPFEIIHPSHPFHSLRL 136
>At5g02360.1 68418.m00159 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 342
Score = 27.5 bits (58), Expect = 5.3
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +1
Query: 139 KKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCG--KDQFHIRMRLHPFH 312
KK + PL + +++ EYE GR CCN ++CG + ++ + P+H
Sbjct: 255 KKHHALRPHPLTLTVITSEYEG------NVGRFCCNACQRESCGFVYEDLGAKIGVLPYH 308
>At5g46660.1 68418.m05749 CHP-rich zinc finger protein, putative
contains similarity to CHP-rich zinc finger protein
Length = 305
Score = 27.1 bits (57), Expect = 6.9
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +1
Query: 241 CNKYLVKNCGKDQFHIRMRLHPFHVIRINKML 336
C K K C + I+ HPFH +R+ L
Sbjct: 143 CQKNFHKECVQSPLEIKHPSHPFHSLRLYSYL 174
>At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1210
Score = 27.1 bits (57), Expect = 6.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 310 HVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQ 426
H+ RIN +L +D G+ G G + T+ARV Q
Sbjct: 240 HITRINSLLCLESSDVRMIGILGPPGIGKTTIARVLYDQ 278
>At5g13020.1 68418.m01492 emsy N terminus domain-containing protein
/ ENT domain-containing protein contains Pfam profile
PF03735: ENT domain
Length = 397
Score = 27.1 bits (57), Expect = 6.9
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -1
Query: 492 STTQSLNDLCLPTVT*AYRHNGLSNTHTRYCALGFPERTTHPSLEPISSSARQ 334
S Q ++D P V+ + + S + A+G P + HPS++P SS+ R+
Sbjct: 126 SVPQLVHDAPSPAVSGSRKKQKTSQSIASL-AMGPPSPSLHPSMQPSSSALRR 177
>At3g15115.1 68416.m01912 expressed protein
Length = 339
Score = 27.1 bits (57), Expect = 6.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 13 FVENTMGRRPARCYRYCKNKPYP 81
F +N + RR +R RYC + PYP
Sbjct: 26 FFDNLLDRR-SRILRYCHSDPYP 47
>At4g12430.1 68417.m01967 trehalose-6-phosphate phosphatase,
putative similar to trehalose-6-phosphate phosphatase
(AtTPPB) [Arabidopsis thaliana] GI:2944180; contains
Pfam profile PF02358: Trehalose-phosphatase
Length = 368
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 370 SQSGAYQLQRTTTFY*CG*HGRGVVSSGCGTDLYRSS 260
S+ YQL T Y G HG +++S G + ++S+
Sbjct: 151 SRDKVYQLVGLTELYYAGSHGMDIMTSSDGPNCFKST 187
>At2g41400.1 68415.m05109 expressed protein
Length = 150
Score = 26.6 bits (56), Expect = 9.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 73 VYSYNIDNISLVGAPLCSPQSDP 5
++SY ID +S+ G CS DP
Sbjct: 26 LWSYTIDRVSIRGVVYCSLDGDP 48
>At1g19510.1 68414.m02430 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 100
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 103 VPDPKIRIFDLGKKRATVDDFPL 171
VP PK + D+G K +DDF L
Sbjct: 69 VPLPKYKTVDVGSKSRGIDDFDL 91
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,938,938
Number of Sequences: 28952
Number of extensions: 262545
Number of successful extensions: 722
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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