Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_B09
(442 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo... 28 0.55
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 28 0.73
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces... 26 3.0
SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces pom... 26 3.0
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 25 3.9
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 25 6.8
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 25 6.8
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ... 25 6.8
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch... 24 9.0
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ... 24 9.0
>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 571
Score = 28.3 bits (60), Expect = 0.55
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Frame = +2
Query: 185 VGEVLGKRLETAGFDKAYVVLGQF------LVLKKEKELFQEWMKDTCSANSKQSADCYQ 346
VGE L KRLE G V G F L+ K E F+ W+ +T N +AD Y
Sbjct: 7 VGEYLFKRLEQLGVKSILGVPGDFNLALLDLIEKVGDEKFR-WVGNTNELNGAYAADGYA 65
Query: 347 CLN 355
+N
Sbjct: 66 RVN 68
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 27.9 bits (59), Expect = 0.73
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 235 LCGFGPVSGTQERKRIISRMDERYLQCKFQTIGRLLSV 348
LC P++ T + S + E+ LQ FQ GR+L++
Sbjct: 289 LCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNI 326
>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 684
Score = 25.8 bits (54), Expect = 3.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 263 VPETGPKPHRPYQNQPFLISFL 198
VP PK H P++ P LIS L
Sbjct: 576 VPMLSPKYHPPFEQLPLLISSL 597
>SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 336
Score = 25.8 bits (54), Expect = 3.0
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +2
Query: 242 VLGQFLVLKKEKELFQEW 295
V+G+FLVL++ K++ Q W
Sbjct: 256 VVGKFLVLEENKKIVQTW 273
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 25.4 bits (53), Expect = 3.9
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -3
Query: 386 TLNIKIHHTIHSSTDSNLPIVWNLH 312
TL+ +HH IH+ T SNL ++ N++
Sbjct: 37 TLDNLVHH-IHNGTTSNLRLISNIN 60
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 24.6 bits (51), Expect = 6.8
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -3
Query: 236 RPYQNQPFLISFLKLHQHQPNPLQVY 159
RPY P L FLKL Q NP +Y
Sbjct: 644 RPYVLSPILNGFLKL---QDNPSSIY 666
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 24.6 bits (51), Expect = 6.8
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -2
Query: 222 PAVSNLFPKTSPTPAKSVTGLSPIGSATKFRCFCDVLDI 106
PAVS+ F +PT S T S I R + +D+
Sbjct: 484 PAVSSTFSFNAPTTTPSATSFSIINKEKPARSPNETIDV 522
>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 24.6 bits (51), Expect = 6.8
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +1
Query: 67 LRERDLTLKSYVKNVEYITKTSK 135
L+E + LKS +KN+E ITKT K
Sbjct: 34 LKEIEQRLKS-IKNIEKITKTIK 55
>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
cytochrome c oxidase assembly protein Cox1101,
mitochondrial ribosomal protein
Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 24.2 bits (50), Expect = 9.0
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = -2
Query: 210 NLFPKTSPTPAKSVT-GLSPIGSATKF 133
N++P TSP P VT P+G +
Sbjct: 220 NIYPSTSPNPTSPVTLNRLPLGKKDSY 246
>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
cytochrome c oxidase assembly protein Cox1102,
mitochondrial ribosomal protein
Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 24.2 bits (50), Expect = 9.0
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = -2
Query: 210 NLFPKTSPTPAKSVT-GLSPIGSATKF 133
N++P TSP P VT P+G +
Sbjct: 220 NIYPSTSPNPTSPVTLNRLPLGKKDSY 246
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,747,679
Number of Sequences: 5004
Number of extensions: 34626
Number of successful extensions: 124
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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