Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B09
         (442 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0552 + 22040547-22040579,22040655-22040855,22040939-220411...    32   0.23 
02_05_1264 + 35321972-35322448,35323022-35323252,35323903-353245...    29   2.2  
01_03_0059 + 12109301-12109330,12109465-12109587,12109663-12110112     28   2.9  
10_08_0409 - 17710118-17710624,17711003-17711701,17711828-17712121     27   8.8  
09_04_0070 + 14308446-14308511,14308844-14309005,14309420-143094...    27   8.8  
08_02_0516 + 18080706-18080760,18081796-18081885,18082479-180825...    27   8.8  
05_07_0040 + 27243195-27243428,27243665-27243736,27243837-272439...    27   8.8  
04_04_1319 - 32615923-32615979,32616431-32616495,32616654-326167...    27   8.8  

>06_03_0552 +
           22040547-22040579,22040655-22040855,22040939-22041115,
           22041791-22041984,22042277-22042539,22042964-22043073
          Length = 325

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
 Frame = +2

Query: 152 MGDKPVTDLAGVGEVLGKRLETAGFDKAYV--VLGQFLVLKKEKELFQEWMKDTCSANSK 325
           MGDK       VG++L   L+    DK     +  +  VLKKE  +F E+     S    
Sbjct: 1   MGDKAEWGDGFVGKILFPSLQKKSGDKRTKKQLKNKLDVLKKEYSMFMEFKNCATSLGWD 60

Query: 326 QSADCYQCLNEWCDE 370
           ++     C  EW DE
Sbjct: 61  EAKQTIVCSAEWWDE 75


>02_05_1264 +
           35321972-35322448,35323022-35323252,35323903-35324565,
           35324698-35324806,35324965-35325383
          Length = 632

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = -2

Query: 222 PAVSNLFPKTSPTPAKSVTGLSPIGSATKFRCFCDVLDIFNVTFK-S*IALTKNLTSNLC 46
           PA+++ FP   P+  KSV  LS +  ++  R    ++ +  +TF  S   L KN   NL 
Sbjct: 520 PAMASEFP---PSTGKSVVPLSAVNPSSSIRVTAGIIQLGGITFTGSTEHLQKNGDFNL- 575

Query: 45  YLSYT 31
            LS+T
Sbjct: 576 LLSFT 580


>01_03_0059 + 12109301-12109330,12109465-12109587,12109663-12110112
          Length = 200

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = +1

Query: 163 TCNGFGWCW*SFRKEIRNGWF**GLCGFGPVSGTQERKRIISRMDERYLQCKF 321
           TC G  W W   R+ +   W    LC  G  S  + R+ + S   + +  C F
Sbjct: 62  TCAGTNW-WPRRRRILHGKWLKHILCSAGGRSKAERRRHVCSTSPDAHRGCYF 113


>10_08_0409 - 17710118-17710624,17711003-17711701,17711828-17712121
          Length = 499

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 234 ALSKPAVSNLFPKTSPTPAKSVTGLS 157
           A + PAV  + PK +P PA  V G S
Sbjct: 60  AFNLPAVFTIGPKITPAPAPEVDGAS 85


>09_04_0070 +
           14308446-14308511,14308844-14309005,14309420-14309473,
           14310009-14310073,14310391-14310459,14310590-14310767,
           14311085-14311231,14311316-14311432,14311507-14311619,
           14311703-14311781,14311892-14312020
          Length = 392

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 206 RLETAGFDKAYVVLGQFLVLKKEKELFQEWMKD 304
           RLE  GFD+A +VL  F    K+++L   ++ D
Sbjct: 350 RLEAMGFDRA-LVLDVFFACNKDEQLAANYLLD 381


>08_02_0516 +
           18080706-18080760,18081796-18081885,18082479-18082573,
           18083658-18083726,18083812-18084393
          Length = 296

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 260 PETGPKPHRPYQNQPFLISFLKLHQHQPNPLQVYHP*AQQ 141
           P+  P+P +P Q Q  L    +    Q +P Q+ HP +QQ
Sbjct: 160 PQLHPQPQQPLQPQLQLHPQPQQQPSQLHPQQLLHPQSQQ 199


>05_07_0040 +
           27243195-27243428,27243665-27243736,27243837-27243904,
           27243987-27244113,27244514-27244669
          Length = 218

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +2

Query: 272 EKELFQEWMKDTCSANSKQSADCYQCLNEWCDE 370
           ++E  Q +M+  CS          +C+  WCDE
Sbjct: 59  QEEDDQTYMETPCSCRGSLKYAHRKCIQRWCDE 91


>04_04_1319 -
           32615923-32615979,32616431-32616495,32616654-32616732,
           32616817-32616946,32617478-32617550,32617634-32617688,
           32617800-32617846,32619232-32619421
          Length = 231

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 218 AGFDKAYVVLGQFLVLKKEKELFQEWMKDTC 310
           AG DK Y    + LVLK++ E    ++ D C
Sbjct: 63  AGIDKTYYSADEALVLKQKAEDVVPYLNDRC 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,284,851
Number of Sequences: 37544
Number of extensions: 195767
Number of successful extensions: 566
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)