Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B09
         (442 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9596| Best HMM Match : BAF (HMM E-Value=1.54143e-44)               118   2e-27
SB_46451| Best HMM Match : BAF (HMM E-Value=2.8e-17)                   80   9e-16
SB_58620| Best HMM Match : XH (HMM E-Value=1.6)                        28   3.9  
SB_54595| Best HMM Match : Sec7 (HMM E-Value=7.7e-09)                  28   3.9  
SB_49242| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_15410| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_9596| Best HMM Match : BAF (HMM E-Value=1.54143e-44)
          Length = 759

 Score =  118 bits (285), Expect = 2e-27
 Identities = 52/75 (69%), Positives = 65/75 (86%)
 Frame = +2

Query: 107 MSSTSQKHRNFVAEPMGDKPVTDLAGVGEVLGKRLETAGFDKAYVVLGQFLVLKKEKELF 286
           MSSTSQKH+NFV+EPMG+K VTDLAG+G VLG +    GFDKAYVVLGQFL+LKK++E+F
Sbjct: 1   MSSTSQKHKNFVSEPMGEKLVTDLAGIGPVLGDKFTDKGFDKAYVVLGQFLLLKKDEEMF 60

Query: 287 QEWMKDTCSANSKQS 331
           ++W+KDT  AN KQ+
Sbjct: 61  EDWVKDTIGANKKQA 75


>SB_46451| Best HMM Match : BAF (HMM E-Value=2.8e-17)
          Length = 87

 Score = 79.8 bits (188), Expect = 9e-16
 Identities = 36/85 (42%), Positives = 52/85 (61%)
 Frame = +2

Query: 116 TSQKHRNFVAEPMGDKPVTDLAGVGEVLGKRLETAGFDKAYVVLGQFLVLKKEKELFQEW 295
           T++KH NFV EPMG K V  + G+G    K LE  G   A+ +LG+FL+   +KE F ++
Sbjct: 2   TTKKHENFVGEPMGRKAVDKVPGIGPEHKKELERKGIHYAHQLLGEFLIRNMDKEKFGDY 61

Query: 296 MKDTCSANSKQSADCYQCLNEWCDE 370
           +     AN+K+  DCY+ +  WCDE
Sbjct: 62  IMG-IGANNKEKNDCYEAMKGWCDE 85


>SB_58620| Best HMM Match : XH (HMM E-Value=1.6)
          Length = 376

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 196 NFTNTSQIRYRFITHRLSNEVSMFL 122
           NF + S IRY  + HR  N   M L
Sbjct: 84  NFNHLSSIRYEVLDHRFKNHTRMLL 108


>SB_54595| Best HMM Match : Sec7 (HMM E-Value=7.7e-09)
          Length = 918

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 253 VSGTQERKRIISRMDERYLQCKFQTIGRLLSVLE 354
           +  TQER+RI+     RY QC     G  +++ E
Sbjct: 662 IGETQERERILIPFSNRYYQCNTPDYGSAVTLRE 695


>SB_49242| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = -2

Query: 213 SNLFPKTSPTPAKSVTGLSPIGSATKFRCFCDVLDIFNVTFKS*IALTKNLTSNLCY 43
           SN+  KT+ T   +VT  S +   +      +V D  NVT  S +    NLT    Y
Sbjct: 4   SNVTDKTNVTDGSNVTDRSNVTDKSNMMDKSNVTDKTNVTDGSNVTDKSNLTGGYTY 60


>SB_15410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1147

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 186  TPAKSVTGLSPIGSATKFRCFCDV 115
            TP    TG++P+G +T+F  F D+
Sbjct: 1093 TPRPYFTGVAPLGHSTEFNPFPDI 1116


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,516,116
Number of Sequences: 59808
Number of extensions: 240741
Number of successful extensions: 605
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)