Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B09
         (442 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19152-8|CAA79543.2|   89|Caenorhabditis elegans Hypothetical pr...   115   2e-26
AF303272-1|AAG50230.1|   89|Caenorhabditis elegans barrier-to-au...   115   2e-26
U41030-7|AAP31440.1|  250|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U41030-6|AAA82365.1|  375|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AF040654-2|AAK21449.2| 1014|Caenorhabditis elegans Hypothetical ...    27   6.0  

>Z19152-8|CAA79543.2|   89|Caenorhabditis elegans Hypothetical
           protein B0464.7 protein.
          Length = 89

 Score =  115 bits (276), Expect = 2e-26
 Identities = 48/87 (55%), Positives = 63/87 (72%)
 Frame = +2

Query: 113 STSQKHRNFVAEPMGDKPVTDLAGVGEVLGKRLETAGFDKAYVVLGQFLVLKKEKELFQE 292
           STS KHR FV EPMGDK VT +AG+G   G +L  AGFDKAYV+ GQ+L+LKK+++LF E
Sbjct: 2   STSVKHREFVGEPMGDKEVTCIAGIGPTYGTKLTDAGFDKAYVLFGQYLLLKKDEDLFIE 61

Query: 293 WMKDTCSANSKQSADCYQCLNEWCDEF 373
           W+K+T    +  +   + CLNEW D+F
Sbjct: 62  WLKETAGVTANHAKTAFNCLNEWADQF 88


>AF303272-1|AAG50230.1|   89|Caenorhabditis elegans
           barrier-to-autointegration factor protein.
          Length = 89

 Score =  115 bits (276), Expect = 2e-26
 Identities = 48/87 (55%), Positives = 63/87 (72%)
 Frame = +2

Query: 113 STSQKHRNFVAEPMGDKPVTDLAGVGEVLGKRLETAGFDKAYVVLGQFLVLKKEKELFQE 292
           STS KHR FV EPMGDK VT +AG+G   G +L  AGFDKAYV+ GQ+L+LKK+++LF E
Sbjct: 2   STSVKHREFVGEPMGDKEVTCIAGIGPTYGTKLTDAGFDKAYVLFGQYLLLKKDEDLFIE 61

Query: 293 WMKDTCSANSKQSADCYQCLNEWCDEF 373
           W+K+T    +  +   + CLNEW D+F
Sbjct: 62  WLKETAGVTANHAKTAFNCLNEWADQF 88


>U41030-7|AAP31440.1|  250|Caenorhabditis elegans Hypothetical
           protein C44C1.5b protein.
          Length = 250

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 219 LVLIRPMWFWASFWY-SRKKKNYFKNG*KI 305
           LV++ P++ W   WY S   K+Y K G K+
Sbjct: 9   LVIVAPIFLWMYSWYISAIPKHYVKPGTKL 38


>U41030-6|AAA82365.1|  375|Caenorhabditis elegans Hypothetical
           protein C44C1.5a protein.
          Length = 375

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 219 LVLIRPMWFWASFWY-SRKKKNYFKNG*KI 305
           LV++ P++ W   WY S   K+Y K G K+
Sbjct: 9   LVIVAPIFLWMYSWYISAIPKHYVKPGTKL 38


>AF040654-2|AAK21449.2| 1014|Caenorhabditis elegans Hypothetical
            protein R06B10.2 protein.
          Length = 1014

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 18/71 (25%), Positives = 29/71 (40%)
 Frame = +2

Query: 140  VAEPMGDKPVTDLAGVGEVLGKRLETAGFDKAYVVLGQFLVLKKEKELFQEWMKDTCSAN 319
            + E  GD  V DL            T+G + A+V  G FL+ K+    F+E   +     
Sbjct: 888  IIETRGDMNVADLIDDLRKQRAMAITSGLELAFVDAGIFLLFKRMMNNFEEEYPEDLKQM 947

Query: 320  SKQSADCYQCL 352
             K +   Y+ +
Sbjct: 948  LKDAVQYYKLI 958


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,580,294
Number of Sequences: 27780
Number of extensions: 192168
Number of successful extensions: 556
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)