Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_B09
         (442 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   1.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   4.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   4.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.9  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 117 HHKNIETSLLSLWVINL*RIWL 182
           HH+N +T  +S WV  +   WL
Sbjct: 319 HHRNADTHEMSEWVKVVFLYWL 340


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 128 VFVMYSTFLT*LLRVKSRSRRI*QVIFVICHILIM 24
           V +M  T     L  +S  R I   + +ICHIL M
Sbjct: 264 VTMMLLTLTVLWLDSRSTERMIAASVNLICHILCM 298


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 421 ILGINNTEDFSIHLILKFITPFI 353
           +LG+NNT D +    L + T FI
Sbjct: 322 VLGLNNTPDRTPDQCLFYNTDFI 344


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 383 LNIKIHHTIHSST 345
           +N K+HHT  SS+
Sbjct: 407 INRKVHHTTSSSS 419


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,941
Number of Sequences: 438
Number of extensions: 2520
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)