Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_B09
(442 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 30 0.60
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 27 4.2
At4g36890.1 68417.m05230 glycosyl transferase family 43 protein ... 27 7.4
At1g09500.2 68414.m01065 cinnamyl-alcohol dehydrogenase family /... 27 7.4
At1g09500.1 68414.m01064 cinnamyl-alcohol dehydrogenase family /... 27 7.4
At1g09480.1 68414.m01060 cinnamyl-alcohol dehydrogenase family /... 27 7.4
At5g58640.1 68418.m07348 selenoprotein-related contains weak sim... 26 9.8
At5g38470.1 68418.m04650 DNA repair protein RAD23, putative simi... 26 9.8
At4g03430.1 68417.m00470 pre-mRNA splicing factor-related simila... 26 9.8
At4g01090.1 68417.m00147 extra-large G-protein-related contains ... 26 9.8
At1g61750.1 68414.m06964 expressed protein contains Pfam profile... 26 9.8
At1g34590.1 68414.m04299 hypothetical protein 26 9.8
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 30.3 bits (65), Expect = 0.60
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 248 PKPHRPYQNQPFLISFLKLHQHQPNPLQVYHP 153
P P Y P+ + H HQP+P+Q Y P
Sbjct: 393 PPPPYGYMPSPYQQQYPPNHHHQPSPMQHYAP 424
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 27.5 bits (58), Expect = 4.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 263 VPETGPKPHRPYQNQPFLISFLKLHQHQPNPLQVYHP 153
+P +GP+P P+ P SF + Q QP P + P
Sbjct: 52 MPGSGPRPSPPFGQSP--QSFPQQQQQQPRPSPMARP 86
>At4g36890.1 68417.m05230 glycosyl transferase family 43 protein low
similarity to Galactosylgalactosylxylosylprotein
3-beta-glucuronosyltransferase 1, Homo sapiens
[SP|Q9P2W7], Rattus norvegicus [SP|O35789]; contains
Pfam domain Glycosyltransferase family 43 [PF03360]
Length = 525
Score = 26.6 bits (56), Expect = 7.4
Identities = 21/63 (33%), Positives = 29/63 (46%)
Frame = +2
Query: 149 PMGDKPVTDLAGVGEVLGKRLETAGFDKAYVVLGQFLVLKKEKELFQEWMKDTCSANSKQ 328
P K + V VL ++LE +GF VL L L +E E EW+KD S N +
Sbjct: 341 PYAGKSAVYIDDVAAVLPQKLEWSGF-----VLNSRL-LWEEAENKPEWVKDFGSLNENE 394
Query: 329 SAD 337
+
Sbjct: 395 GVE 397
>At1g09500.2 68414.m01065 cinnamyl-alcohol dehydrogenase family /
CAD family similar to cinnamyl alcohol dehydrogenase,
Eucalyptus gunnii [gi:1143445], CPRD14 protein, Vigna
unguiculata [gi:1854445]
Length = 291
Score = 26.6 bits (56), Expect = 7.4
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +2
Query: 203 KRLETAGFDKAYVVLGQFLVLKKEKELFQEWMKDTCSANSKQ 328
K LET + Y++ G + +K + + +E+ D C A+ +
Sbjct: 205 KALETPSANGRYIIDGPVVTIKDIENVLREFFPDLCIADRNE 246
>At1g09500.1 68414.m01064 cinnamyl-alcohol dehydrogenase family /
CAD family similar to cinnamyl alcohol dehydrogenase,
Eucalyptus gunnii [gi:1143445], CPRD14 protein, Vigna
unguiculata [gi:1854445]
Length = 325
Score = 26.6 bits (56), Expect = 7.4
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +2
Query: 203 KRLETAGFDKAYVVLGQFLVLKKEKELFQEWMKDTCSANSKQ 328
K LET + Y++ G + +K + + +E+ D C A+ +
Sbjct: 239 KALETPSANGRYIIDGPVVTIKDIENVLREFFPDLCIADRNE 280
>At1g09480.1 68414.m01060 cinnamyl-alcohol dehydrogenase family /
CAD family similar to cinnamyl alcohol dehydrogenase,
Eucalyptus gunnii [gi:1143445], CPRD14 protein, Vigna
unguiculata [gi:1854445]
Length = 369
Score = 26.6 bits (56), Expect = 7.4
Identities = 13/56 (23%), Positives = 28/56 (50%)
Frame = +2
Query: 203 KRLETAGFDKAYVVLGQFLVLKKEKELFQEWMKDTCSANSKQSADCYQCLNEWCDE 370
K LET + Y++ G + + ++ +E + D C A++ + + + L + C E
Sbjct: 285 KALETPSANGRYIIDGPIMSVSDIIDILRELLPDLCIADTNEESVMNEMLCKVCVE 340
>At5g58640.1 68418.m07348 selenoprotein-related contains weak
similarity to Selenoprotein W (Swiss-Prot:P49904)
[Rattus norvegicus]
Length = 228
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 260 PETGPKPHRPYQNQPFLISFLKLHQHQPNPL 168
P P+PHRP+Q P + HQH+PN +
Sbjct: 27 PPPKPQPHRPHQ-PPHI-----PHQHRPNAI 51
>At5g38470.1 68418.m04650 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform I GI:1914683 from [Daucus carota]
Length = 378
Score = 26.2 bits (55), Expect = 9.8
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 203 KRLETAGFDKAYVVLGQFLVLKKEKELFQEWMKD 304
+RLE GFD+A +VL F K +EL ++ D
Sbjct: 338 ERLEGMGFDRA-MVLEVFFACNKNEELAANYLLD 370
>At4g03430.1 68417.m00470 pre-mRNA splicing factor-related similar
to pre-mRNA splicing factor pre-mRNA splicing factor
prp1 (SP:Q12381) [Fission yeast]
Length = 1029
Score = 26.2 bits (55), Expect = 9.8
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +2
Query: 149 PMGDKPVTDLAGVGEVLGKRLETAGFDKAYVVLGQFLV 262
P G PVTDL VGE G L + + V GQ +V
Sbjct: 309 PWGQTPVTDLTAVGEGRGTVLSLKLDNLSDSVSGQTVV 346
>At4g01090.1 68417.m00147 extra-large G-protein-related contains
weak similarity to extra-large G-protein [Arabidopsis
thaliana] gi|3201682|gb|AAC19353
Length = 714
Score = 26.2 bits (55), Expect = 9.8
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Frame = -3
Query: 245 KPHRPYQNQPFLISFLKLH---QHQPNPLQVYH 156
KP P QNQPFL + LH H P P YH
Sbjct: 103 KPKEPDQNQPFLRP-VHLHGHANHNPGP-SYYH 133
>At1g61750.1 68414.m06964 expressed protein contains Pfam profile:
PF01657 domain of unknown function
Length = 352
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 335 DCYQCLNEWCDEF*Y*VYRKVFSVVYS*N 421
DCY+CL +E Y K F++VYS N
Sbjct: 207 DCYRCLKSAYNETKDCCYGKRFALVYSSN 235
>At1g34590.1 68414.m04299 hypothetical protein
Length = 820
Score = 26.2 bits (55), Expect = 9.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 260 VLKKEKELFQEWMKDTCSANS 322
VL++EKE EW+KD A +
Sbjct: 740 VLEREKEQVDEWLKDFADAEA 760
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,819,426
Number of Sequences: 28952
Number of extensions: 174077
Number of successful extensions: 481
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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